Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1261 ATGGAGGATTCAGAGGAAGAAGAACTTCTAAATCTTACTCTTTCAGTTGATGCTGGTAGGAAGAGGAGAAAGAAAGGAAGGACAAGGGATAGTAATAATAATAATAGTAACACTAATTCTGTTATTATTCCTATTAAGTCCAACGAAGGGATGATCTTCAGGCTCCTCCAAATGAGGGAGCTGATGCTAAGACAAAACCACAGAATTAGAAAAGGAGTAGTTGAAGATGGGATCAACAACAACAAGAATGGCCTTCCTTTGATTCACTTGCTTCTCTCAACAGCCACTGCTGTTGATGATCAAAGAAACTATTGTGCAGCTCTTGAGAATCTCATTGACTTGTACCAAACAGTTTCCCTAACAGGTGACTCGGTTCAACGTGTTGTGGCCTATTTCGCTGATGGTTTGGCTGCAAGGCTTCTCACAAAAAAGTCACCTTTCTATGACATGCTCATGGAGGAGCCAACAAGTGAGGAAGAGTTTCTTGCATTCACTGATCTCTATAGAGTCTCACCCTATTACCAATTTGCTCACTTCACAGCAAACCAGGCCATTTTGGAGGCCTATGAGGAGGAGGAAGAGAGGAACAACAAAGCACTTCATGTCATTGACTTTGATGTCTCCTACGGCTTCCAATGGCCTTCTCTTATTCAATCACTCTCCGAAAAGGCAACCAGTGGCAACAGAATTTCCCTCAGGATAACAGGTTTTGGGAACAATCTGAAAGAATTGCAAGAAACTGAGGCAAGGTTGGTTAGTTTCTCAAAGGGGTTTGGTAATCACCTTGTGTTTGAGTTCCAAGGGCTTCTAAGAGGGTCTTCAAGGGTCTTCAACCTGAGGAAAAAGAAAAATGAAACTGTGGCAGTGAACCTTGTTTCTTATTTGAACACTTCGAGTTGTTTCATGAAGGTTTCTGACACATTGGGATTTGTTCATTCTCTTAGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGTAGGAGTCTTAAGACCTTCTTGTCAAGGTTCACTGAGTCGTTGCACTATTTTGCAGCCATGTTTGATTCACTGGATGATTGCTTGCCACTTGAGAGCACTGAGAGGTTGAAGATTGAGAAGAAGGTTCTGGGGAAAGAGATCAAAAGCATGCTCAACTATGACATGGATGGTGTGGATTATTGCCCCAAATATGAGAGGATGGAAACATGGAAAGGGAGAATGGAGAATCATGGGTTTGTTGGGAGAAAAATAAGCTCAAAGTGTGTGATCCAAGCAAAGCTGCTTCTGAAGATGAGGACCCATTATTATCCACTGCAGTTTGAGGAAGAGGGTGGTGGGGGTTTCAGAGTTTCTGAAAGGGATGAAGGGAGAGTTATCTCTTTGGGGTGGCAAAATAGGTTTCTTCTCACTGTGTCATCATGGCAACCAGTTTGA 1416 0.4266 MEDSEEEELLNLTLSVDAGRKRRKKGRTRDSNNNNSNTNSVIIPIKSNEGMIFRLLQMRELMLRQNHRIRKGVVEDGINNNKNGLPLIHLLLSTATAVDDQRNYCAALENLIDLYQTVSLTGDSVQRVVAYFADGLAARLLTKKSPFYDMLMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGNNLKELQETEARLVSFSKGFGNHLVFEFQGLLRGSSRVFNLRKKKNETVAVNLVSYLNTSSCFMKVSDTLGFVHSLSPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLKIEKKVLGKEIKSMLNYDMDGVDYCPKYERMETWKGRMENHGFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGGGFRVSERDEGRVISLGWQNRFLLTVSSWQPV* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1261 471 Pfam GRAS domain family 87 469 IPR005202 -
Gso16g1261 471 MobiDBLite consensus disorder prediction 19 40 - -
Gso16g1261 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 469 IPR005202 -
Gso16g1261 471 ProSiteProfiles GRAS family profile. 78 469 IPR005202 -
Gso16g1261 471 PANTHER OSJNBA0084A10.13 PROTEIN 8 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1261 Gso-Chr16 31904484 31906400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1261 78 469 GRAS Transcription Factor Family AT1G14920 33.415 1.09e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso16g1261 GRAS 6.7e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1261 - - gmx:100798251 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1261 16 31904484 31906400 Gso2g0620 2 6429500 6431377 GST
Gso16g1261 16 31904484 31906400 Gso20g1427 20 44467382 44469068 PCT
Gso16g1261 16 31904484 31906400 Gso10g1928 10 46251270 46252928 PCT
Gso20g1427 20 44467382 44469068 Gso16g1261 16 31904484 31906400 PCT
Gso10g1928 10 46251270 46252928 Gso16g1261 16 31904484 31906400 PCT