Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1258 ATGGATTCAAATGGGAGCCTACGTGCTAACACCTGGGCAAGGTCGTCGTCCTTGACCTCTCCTGCAAGTGGTTTATCCTCAGATCCTCTTTCTTTCCCAGGTTTTGGTTTGCAGCATAATCAACAAAAATGGGATGTTCCCTCAAATTCAGATTTTGGGATCAGGGCTGAAGCACCTTTCAAAGAATTCAATCAGCCCTCTCAAACCCAGTCTCCGCTTCCTTGCAACTCAAACAATGAGATTGAAATCCCTGGTCAAGAAAACTGTCATCTGAGTGAATCATCACAAACCAATACACTCCAAGATTGGGACCCCAGTGTGATGTTGAATAACCTATCTTTCTTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGCTCGTCAAAAAGGCATTGGACAACCCAATGAACTTGTAACTCAGGAACAGCAGCTCGTTACAACTGATCTCACATCAATCATTATTCAATTGATCTCTACCGCAGGTAGTCTTCTCCCTTCTGCTAGGCATAACCTTGTAAACACTAGTTCATTGGTTGGACAGATTGACCAGCTTCGTGGGACAACCATTCCTCCTGGGACCGGTGCAAGTAACGGCTGTATTCAACCACAGAATAATGGTGGAAAAATATTGTCTGATCAGTCCATGCAGACTGATCTACCTAATAGCGGTGAAATGGAGCAAAAGTACAATATGGTAGAACATGACTTGAAAGATGAAGAAGATGTAGAGGATGGAGAAAACCTTGCCCCTGGTTCATATGAGATTCTACAATTAGAAAAAGAAGAAATCCTTGCTCCTCATACCCATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGAGATGCAAATCTTCGAATGCACATGCGAGGCCATGGTGACGAGTACAAAACCCCAGCAGCGCTTGCCAAACCGCACAAAGAATCTGCATCACCAAAGCCTATCAAGAGGTATTCCTGCCCCTATCCTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTCCAGCCTCTGAAGACGATCTTATGTGTCAAAAACCATTACAAAAGGACGCATTGTGACAAGAGTTACACTTGCAGTAGGTGCAACACCAAGAAGTTCTCAGTCATGGCTGATCTAAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTCTGTTCGTGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAAGGGCATGCACCAGCCATTCCTTTGGATGACACTAAAGGGGCAGGGGTAGCTGAGGCACCCATTCATGATAGCAAAGAGAACAACAGTAAGGTGCAGAGCATGAACTTCACTTTTGGATCAAATCCTTCAAATGCAAATGAAGTTCCAAATGCCATGGATGTAAAAGGCGATAGCGATGATCCTATCAATTATTTCTCATCATTGAACTTTGAAGCCAACTTTGGTGAGTTTAATGAATTCACCAGACCTCTATTTGATGACCCAGAAGGTTCGTTCTCTTTTGTCATGCCTGGATCTTTCAAATCTGGAGGAGAATCTAGTTCTGACAATCTTTTATAA 1566 0.4317 MDSNGSLRANTWARSSSLTSPASGLSSDPLSFPGFGLQHNQQKWDVPSNSDFGIRAEAPFKEFNQPSQTQSPLPCNSNNEIEIPGQENCHLSESSQTNTLQDWDPSVMLNNLSFLEEKIHQLQDLVHLIARQKGIGQPNELVTQEQQLVTTDLTSIIIQLISTAGSLLPSARHNLVNTSSLVGQIDQLRGTTIPPGTGASNGCIQPQNNGGKILSDQSMQTDLPNSGEMEQKYNMVEHDLKDEEDVEDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESASPKPIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHAPAIPLDDTKGAGVAEAPIHDSKENNSKVQSMNFTFGSNPSNANEVPNAMDVKGDSDDPINYFSSLNFEANFGEFNEFTRPLFDDPEGSFSFVMPGSFKSGGESSSDNLL* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1258 521 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 8 508 IPR044300 GO:0010044|GO:0010447
Gso16g1258 521 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Gso16g1258 521 SMART c2h2final6 359 381 IPR013087 -
Gso16g1258 521 SMART c2h2final6 321 354 IPR013087 -
Gso16g1258 521 SMART c2h2final6 273 295 IPR013087 -
Gso16g1258 521 Gene3D Classic Zinc Finger 257 323 - -
Gso16g1258 521 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 8 508 - -
Gso16g1258 521 MobiDBLite consensus disorder prediction 1 39 - -
Gso16g1258 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
Gso16g1258 521 SUPERFAMILY beta-beta-alpha zinc fingers 271 298 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1258 Gso-Chr16 31881229 31884199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1258 240 521 C2H2 Transcription Factor Family AT1G34370 67.235 1.57e-131 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso16g1258 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1258 - - gmx:100500526 1068.91