Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1256 ATGGGCAGGTATGAGTATATCCCCACTTCTTTCCTCAGTATTTTGTTCATTTTTTGTTTCTGTCCCATGGTGTTGTCCCTGCTGTCTCAAAACCAAACAGAAACCATGATCAATCTCTCAAAGAACCTTCCTCCCCCTGTTCCATGGAATGCCTCATACCCACCATGTTCATGGATGGGAGTGGATTGTGACCCTACCAATTCTTCTGTAATAGGGATATCTTTAATTCGGTATTCACTGTCTGCTTCTGACTTTCTGCCACTTGTTTGCAAAATTCAAACTTTGGAGCATTTTGATGTCTCCAACAACCGTCTGAGCTCAGTCCCAGATGGTTTCATCATTGAGTGTGGAAAGATTAAGGGGTTAAAAAAGCTGAATTTCAGTGGAAACATGTTAGGGGGTGATTTACCATCTTTTCATGGTTTTGATGCATTGGAATCCCTTGATATGTCCTTCAATAATTTGGAAGGGAGTATTGGTATTCAGTTAGATGGATTGGTTAGCCTCAAAAGTTTGAATCTTACTTTCAATAACTTCAGTGGGTCTATTCCTACCAAACTAGGAAATTCCACGGTTTTGGAGCATCTTGTGCTTTCTGTCAATCACTTTGGTGGAAAAATCCCTGATGAATTATTGAGTTATGAAAACTTGACCGAGGTTGATTTTAGGGCAAATCTTCTCTCAGGGTTCATTCCTAGCAATATTGGGAAGCTTTCTAACCTGGAAAGTTTGGTTCTTTCCTCTAATAACCTCACTGGTGAAATTCCAGCTTCCCTTTTGAACCTCACAAAGCTTTCAAGATTTGCGGCAAATCAGAACAATTTCATAGGTCCTGTACCTCCTGGGATTACAAATCATCTCACGAGTTTGGATCTTAGTTTTAATAAATTGTCTGGACCCATTCCAGAAGACCTTTTATCCCCATCACAGTTGCAGGCTGTAGATTTGTCAAATAATATGTTAAATGGGTCGGTGCCTACAAAATTTTCTCCAAACTTGTTCAGGTTAAGGTTTGGGAGCAATCATCTGAGTGGAAACATTCCTCCAGGTGCTTTTGCAGCAGTTCCAAATTTGACATACTTGGAGCTGGATAACAATGACTTGACCGGAACCATACCGGCTGAATTGGAATCATGCAGGAAATTGGCGTTGTTGAATTTAGCACAGAATCACTTGACTGGTGTATTGCCACCACTGCTTGGCAATCTTACCAATCTTCAAGTCTTGAGGCTTCAAATGAACGAGCTTAATGGTACAATCCCTATTGAAATTGGCCAACTTCATAAGTTGTCAATACTGAATTTGAGCTGGAATTCTCTGGGTGGATCAATTCCATCTGAGATTACAAATTTGAGCAGTCTTAATTTCCTGAACTTGCAAAGCAACAATCTGAGTGGTTCCATACCAACATCCATTGAAAACTTGAAACTTCTAATAGAACTCCAACTCGGGGAAAACCAGCTAAGTGGTGTGATACCAAGCATGCCGTGGAATCTGCAGGCGTCACTGAATCTTAGTAGCAACCACCTTAGTGGTAATATTCCCAGCAGTTTTGGTACTTTGGGGAGCCTGGAAGTCTTGGATCTCTCAAATAACAAATTATCTGGTCCAATTCCCAAGGAACTAACTGGAATGTCAAGTTTGACACAGTTGTTACTTGCCAACAATGCACTGCTGTCTGGTGAAATTCCAAAATTCAGTCAACATGTTGAAGTTGTATATTCTGGGACTGGTCTGATAAATAATACTTCACCTGACAACCCAATAGCCAACAGGCCCAACACTGTCTCTAAGAAGGGAATATCTGTCGCTGTGGCAGTTCTCATTGCAATCGTAGCGGCTATTGTTCTTGTTGGCCTTGTCACCCTGCTCGTTGTGTCAGTGTCACGACATTATTACAGGGTTAATGACGAGCATTTACCGTCAAGAGAAGATCATCAGCATCCTCAGGTCATCGAAAGCAAATTATTAACTCCTAATGGAATACACAGATCAAGCATTGACTTCTCCAAAGCCATGGAAGTTGTTGCTGAAGCATCAAATATTACTCTAAAAACAAGGTTTTCAACTTATTATAAGGCCATCATGCCATCTGGATCAATGTATTTTGTCAAGAAACTGAATTGGTCTGACAAGATATTGTCAGTGGGAAGTCATGATAAATTTGTGAAAGAGCTAGAAGTCTTGGCAAAATTGAACAATTCAAATGTCATGACTCCTTTGGGCTATGTTCTGTCCACCGATACTGCTTATATACTATATGAATTCATGTCAAATGGTTCCCTCTTTGATGTTCTTCATGGAAGCATGGAAAACTCTTTAGATTGGGCTAGCAGATACAGTATAGCGGTTGGGGTGGCTCAAGGACTTTCTTTTCTTCACGGATTCACCTCTAGTCCAATACTACTCCTTGACCTGTCAAGTAAAAGTATTATGCTGAAGTCCCTTAAGGAGCCTCTAGTTGGGGACATCGAACACTACAAGGTGATTGATCCCTCAAAGAGTACAGGAAATTTTTCTGCAGTTGCTGGTTCAGTTGGTTATATTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCTGGGAATGTGTACAGCTTTGGTGTCATTCTGCTTGAACTGCTGACAGGAAAACCTGCAGTGACAGAGGGAACGGAATTGGTCAAGTGGGTTGTGCGTAATTCAACAAACCAGGATTACATTCTTGATTTTAATGTCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAATTCTCGAGATTGCTCGTGTTTGTGTTAGTACATCCCCAGAATCAAGACCAAAGATGAAGAGTGTTCTACGAATGCTCTTAAATGCTAGATGA 2853 0.4087 MGRYEYIPTSFLSILFIFCFCPMVLSLLSQNQTETMINLSKNLPPPVPWNASYPPCSWMGVDCDPTNSSVIGISLIRYSLSASDFLPLVCKIQTLEHFDVSNNRLSSVPDGFIIECGKIKGLKKLNFSGNMLGGDLPSFHGFDALESLDMSFNNLEGSIGIQLDGLVSLKSLNLTFNNFSGSIPTKLGNSTVLEHLVLSVNHFGGKIPDELLSYENLTEVDFRANLLSGFIPSNIGKLSNLESLVLSSNNLTGEIPASLLNLTKLSRFAANQNNFIGPVPPGITNHLTSLDLSFNKLSGPIPEDLLSPSQLQAVDLSNNMLNGSVPTKFSPNLFRLRFGSNHLSGNIPPGAFAAVPNLTYLELDNNDLTGTIPAELESCRKLALLNLAQNHLTGVLPPLLGNLTNLQVLRLQMNELNGTIPIEIGQLHKLSILNLSWNSLGGSIPSEITNLSSLNFLNLQSNNLSGSIPTSIENLKLLIELQLGENQLSGVIPSMPWNLQASLNLSSNHLSGNIPSSFGTLGSLEVLDLSNNKLSGPIPKELTGMSSLTQLLLANNALLSGEIPKFSQHVEVVYSGTGLINNTSPDNPIANRPNTVSKKGISVAVAVLIAIVAAIVLVGLVTLLVVSVSRHYYRVNDEHLPSREDHQHPQVIESKLLTPNGIHRSSIDFSKAMEVVAEASNITLKTRFSTYYKAIMPSGSMYFVKKLNWSDKILSVGSHDKFVKELEVLAKLNNSNVMTPLGYVLSTDTAYILYEFMSNGSLFDVLHGSMENSLDWASRYSIAVGVAQGLSFLHGFTSSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVVRNSTNQDYILDFNVSRTSQAVRNQMLAILEIARVCVSTSPESRPKMKSVLRMLLNAR* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1256 950 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
Gso16g1256 950 SUPERFAMILY RNI-like 249 561 - -
Gso16g1256 950 Gene3D Phosphorylase Kinase; domain 1 655 756 - -
Gso16g1256 950 PANTHER F12K21.25 12 947 - -
Gso16g1256 950 SUPERFAMILY Protein kinase-like (PK-like) 688 946 IPR011009 -
Gso16g1256 950 SUPERFAMILY L domain-like 47 282 - -
Gso16g1256 950 Pfam Leucine Rich Repeat 240 262 IPR001611 GO:0005515
Gso16g1256 950 PRINTS Leucine-rich repeat signature 287 300 - -
Gso16g1256 950 PRINTS Leucine-rich repeat signature 521 534 - -
Gso16g1256 950 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 947 - -
Gso16g1256 950 Pfam Leucine rich repeat 502 558 IPR001611 GO:0005515
Gso16g1256 950 Pfam Leucine rich repeat 331 392 IPR001611 GO:0005515
Gso16g1256 950 Gene3D Transferase(Phosphotransferase) domain 1 757 950 - -
Gso16g1256 950 Pfam Leucine Rich repeat 285 299 IPR001611 GO:0005515
Gso16g1256 950 Pfam Protein kinase domain 688 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1256 950 ProSiteProfiles Protein kinase domain profile. 677 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1256 950 SMART LRR_typ_2 331 354 IPR003591 -
Gso16g1256 950 SMART LRR_typ_2 286 308 IPR003591 -
Gso16g1256 950 SMART LRR_typ_2 166 190 IPR003591 -
Gso16g1256 950 SMART LRR_typ_2 451 474 IPR003591 -
Gso16g1256 950 SMART LRR_typ_2 92 115 IPR003591 -
Gso16g1256 950 SMART LRR_typ_2 355 379 IPR003591 -
Gso16g1256 950 SMART LRR_typ_2 238 262 IPR003591 -
Gso16g1256 950 SMART LRR_typ_2 475 498 IPR003591 -
Gso16g1256 950 SMART LRR_typ_2 403 427 IPR003591 -
Gso16g1256 950 SMART LRR_typ_2 521 545 IPR003591 -
Gso16g1256 950 Gene3D Ribonuclease Inhibitor 185 283 IPR032675 -
Gso16g1256 950 Gene3D Ribonuclease Inhibitor 284 583 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1256 Gso-Chr16 31862220 31866386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1256 145 950 Receptor kinase-like Gene Family AT2G41820 38.249 7.79e-153 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso16g1256 Pkinase 5.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1256 - - gmx:100796647 1754.95