Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1249 ATGATCGGAAACTTCATCGACGACATTGACTGCGGCAACTTCTTCGACCACATCGACGACCTCCTCGAATTCCCCGACGACGCCGCCGCCGCTGACACCTCCGCCGCCGCTCCTGTCCCTCCACCGGCGAACTTCTGGTCCGCCGAGTCCGACTCGCTCCCCGCCACCGACACGGTGTTTTCCGACAACTCCGTGACGGACCTCTCGGCGGAGCTCTCTGTTCCGTATGAAGACATTGTGCAATTGGAATGGCTGTCCAATTTTGTTGAGGACTCTTTCTCTGGTGGGAGCATGACCATGAAGAAAGAGGAGCCACAATGCACCACCACCAAGGAGGACATAGCTCCTGCCCAGTTCCAGACAGCAAGCCCAGTATCAGTCCTTGAAAGCAGCAGTTTCTGCTCTGGCGAGAAGGCTGGCACGGAGATTAAAATCTCCGTGCCATGTGGACGCGCGCGCAGCAAGCGCCCGCGTCCTGCAACCTTCAACCCCAATCCAGTGATGCAGCTCATCTCCCCTGCATCCTCCACTGGTGAGAACACGCAGCACAACGCTGCCAACACCTCCAAGGCATCATCGGATTCCGAGAATTTCGCTGAGTCGGTGATCAAGGCTCCTAAGCAGGCCTCTGGGGAGCACAAGAAGAAAAAGAAGATCAAAGTGACTTTCCCATCAGGTCAAGAGCGGAATGCACCATCACAGGCAATTAGGAAATGCTTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGCCGGCTTTTCCCCGAATATCGCCCTGCAGCGAGTCCAACATTTTGTGCGGCCATGCACTCCAACTCCCATAAGAAGGTCCTTGAAATGAGGAACAAGACAGGCACCAAATCTGGCTTTGCAACTGTTTCTGCTGCCTCACCAGAACTCATTCCAAACACTAACAGCAGCCTTACCCTTGAATATATGTGA 1002 0.5489 MIGNFIDDIDCGNFFDHIDDLLEFPDDAAAADTSAAAPVPPPANFWSAESDSLPATDTVFSDNSVTDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSMTMKKEEPQCTTTKEDIAPAQFQTASPVSVLESSSFCSGEKAGTEIKISVPCGRARSKRPRPATFNPNPVMQLISPASSTGENTQHNAANTSKASSDSENFAESVIKAPKQASGEHKKKKKIKVTFPSGQERNAPSQAIRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAMHSNSHKKVLEMRNKTGTKSGFATVSAASPELIPNTNSSLTLEYM* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1249 333 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Gso16g1249 333 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Gso16g1249 333 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Gso16g1249 333 MobiDBLite consensus disorder prediction 165 199 - -
Gso16g1249 333 MobiDBLite consensus disorder prediction 151 232 - -
Gso16g1249 333 PIRSF Txn_fac_GATA_plant 2 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gso16g1249 333 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Gso16g1249 333 PANTHER GATA TRANSCRIPTION FACTOR 1 333 - -
Gso16g1249 333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 296 - -
Gso16g1249 333 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Gso16g1249 333 Gene3D - 233 283 IPR013088 GO:0006355|GO:0008270
Gso16g1249 333 PANTHER GATA TRANSCRIPTION FACTOR 8 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1249 Gso-Chr16 31788301 31794542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1249 18 303 C2C2-Gata Transcription Factor Family AT4G32890 35.593 2.22e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso16g1249 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1249 - - gmx:100783228 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1249 16 31788301 31794542 Gso2g0613 2 6358636 6364602 GST
Gso16g1249 16 31788301 31794542 Gso20g1459 20 44879141 44882569 PCT
Gso16g1249 16 31788301 31794542 Gso10g1891 10 45800692 45804350 PCT
Gso20g1459 20 44879141 44882569 Gso16g1249 16 31788301 31794542 PCT
Gso10g1891 10 45800692 45804350 Gso16g1249 16 31788301 31794542 PCT