Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1246 ATGGCTAAGCATGATGTTGAGGGTGGTTCCTTCGCTGCAAAGGACTACCATGATCCTCCTCCAGCACCATTGATTGATGCTGAGGAACTCACACAGTGGTCCTTCTACAGGGCTTTGATTGCTGAGTTCATTGCCACAATGCTCTTCCTTTACATCACAGTGCTCACTGTGATTGGTTACAAGAGCCAGAGTGATGTAAAGGCTGGGGGTGATGTGTGTGGTGGAGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCTTTGATTAGAGCAATAATGTACATGGTGGCTCAGTGCTTGGGAGCCATATGTGGAGTTGGGTTGGTTAAGGCCTTCCAAAAGGCTTACTACAACAGGTATGGTGGTGGGGCCAATGAGCTCAGTGAAGGATACAGCACAGGTGTTGGATTGGGTGCTGAGATCATTGGAACCTTTGTTTTGGTCTACACTGTGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAACCATCCCAGTAACAGGCACTGGCATTAACCCTGCTAGGAGTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCAATTGCAGCCTTCTACCATCAATTCATATTGAGAGCAAGTGCTGCTAAGGCTCTTGGATCATTCAGGAGCAACCCCACTATTTGA 858 0.486 MAKHDVEGGSFAAKDYHDPPPAPLIDAEELTQWSFYRALIAEFIATMLFLYITVLTVIGYKSQSDVKAGGDVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKAYYNRYGGGANELSEGYSTGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVMYNQQKAWDDHWIFWVGPFIGAAIAAFYHQFILRASAAKALGSFRSNPTI* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1246 285 Pfam Major intrinsic protein 29 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso16g1246 285 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Gso16g1246 285 PANTHER AQUAPORIN PIP2-4-RELATED 7 282 - -
Gso16g1246 285 SUPERFAMILY Aquaporin-like 29 269 IPR023271 -
Gso16g1246 285 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso16g1246 285 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso16g1246 285 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso16g1246 285 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso16g1246 285 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso16g1246 285 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso16g1246 285 Gene3D Glycerol uptake facilitator protein. 22 285 IPR023271 -
Gso16g1246 285 CDD MIP 37 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso16g1246 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 282 IPR034294 -
Gso16g1246 285 TIGRFAM MIP: MIP family channel proteins 41 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1246 Gso-Chr16 31759011 31760896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1246 1 281 Major Intrinsic Protein MIP AT2G37170 84.752 2.88e-179 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1246 K09872 - gmx:100782690 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1246 16 31759011 31760896 Gso2g0612 2 6343098 6346528 GST