Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1238 ATGGAAATTCAATTCCAGCATCCAAAGCAGCACTTGAGAGCAAACACACCAAAAGGAGGCAAAGTATTCAAAGGGAGAAACAACAACAAAACCAAAAGCAAGTATGTTGGGGTGAGGCAAAGAGCATCAGGGAAATGGGTTGCTGAGATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGCACATATGAGACTGCAGAGGAAGCAGCCAGGGCTTATGATGAAGCTGCATGCCTCCTTCGTGGATCCAACACTCGCACCAACTTCATCACACGTGTGTCCCTCGATTCCCCTCTCGCTTCCAGGATTCAGAATCTTCTCAACAGCAGAAATGGTACCAAAACCAAACATCAAGAACAAGATGTGGAAACTTGTCACACAAGGATCAAGAGCAACCGACAAGAGTCGTCGGTTGCTCTAGCAGAAGGAACTTGTCCTCCACAACATGGTGAATTAAGATTTGAATCTTCGTTGGAAGACATGTCCACGTTTAGTATCCCACCGTATATTGATCAGGATTGTCTCCAAAAGAAAATACTTGTGAAAAACGAGAAAAGAAGAAGGGTCAACAGCACCACTAGTACTGCAAGTGCTAGTACTAGTAATAGTACTAATTCAAGCAATAATAGTGACACATGTGAGAACTCACTTTCTAGTGAGACAACACAAAACACACAACAATTTGATGATGATGATGATGCTTATAGGCCTGATTTGAGCAATTTCATAGGGTCTGAGTCAGGTTCTCAGAACAATCCTTCATGGGGATTTGAACCTTCTTCTTTTGTTCATTTTCCATTTAGCCAAGTAATGGATGTGGCAAACCTTCCTGATATAGCTGGCTTGGAGCTTCCAGATTTTGAAAGGATGAAAGTTGAAAGGCAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGGACACTGTCACTGTTCAAGACTCTAATAATAATGTAGCTATCTGGGATTTTCCACCCTTGTGCTCATTTTTGTGTTAA 1011 0.4154 MEIQFQHPKQHLRANTPKGGKVFKGRNNNKTKSKYVGVRQRASGKWVAEIKDTTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSLDSPLASRIQNLLNSRNGTKTKHQEQDVETCHTRIKSNRQESSVALAEGTCPPQHGELRFESSLEDMSTFSIPPYIDQDCLQKKILVKNEKRRRVNSTTSTASASTSNSTNSSNNSDTCENSLSSETTQNTQQFDDDDDAYRPDLSNFIGSESGSQNNPSWGFEPSSFVHFPFSQVMDVANLPDIAGLELPDFERMKVERQISASLYAINGVQEYMDTVTVQDSNNNVAIWDFPPLCSFLC* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1238 336 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Gso16g1238 336 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Gso16g1238 336 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Gso16g1238 336 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 15 320 - -
Gso16g1238 336 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Gso16g1238 336 MobiDBLite consensus disorder prediction 186 254 - -
Gso16g1238 336 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Gso16g1238 336 CDD AP2 33 90 IPR001471 GO:0003700|GO:0006355
Gso16g1238 336 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Gso16g1238 336 MobiDBLite consensus disorder prediction 191 226 - -
Gso16g1238 336 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 320 - -
Gso16g1238 336 MobiDBLite consensus disorder prediction 1 29 - -
Gso16g1238 336 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1238 Gso-Chr16 31696623 31697958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1238 16 109 AP2-EREBP Transcription Factor Family AT5G19790 70.213 1.12e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso16g1238 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1238 K09286 - gmx:100792432 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1238 16 31696623 31697958 Gso2g0603 2 6282204 6283679 GST
Gso19g0958 19 36718351 36719452 Gso16g1238 16 31696623 31697958 PCT
Gso16g0327 16 3705623 3706865 Gso16g1238 16 31696623 31697958 PCT
Gso16g1238 16 31696623 31697958 Gso19g0958 19 36718351 36719452 PCT
Gso16g1238 16 31696623 31697958 Gso16g0327 16 3705623 3706865 PCT