Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1235 ATGGATTTCACAGCGGAGAAGAAGGAATCAGAGAGCAACACCGAAAATGCTCATCCAACAACTTTAGATTCTTCTTCTCAATTGGCATCGGCACTTGATTCCAGCAACAAAGAAATCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAAACATCATACGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCCGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTGTCTCAGGTCGTTTTTGGGAGGACCTGGTTCTTGCCTTGGTGGGTGACCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTTAGCATTCGATTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACATAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATTCATCTTACAGGAACACTTGGTTGAGAGGCTAG 696 0.4468 MDFTAEKKESESNTENAHPTTLDSSSQLASALDSSNKEIEERQARELKAGLHPLKHKFVFWYTRRTPGVRNQTSYEDNIKKIVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNTWLRG* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1235 231 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 36 231 IPR001040 GO:0003723|GO:0003743|GO:0006413
Gso16g1235 231 Gene3D RNA Cap, Translation Initiation Factor Eif4e 25 224 IPR023398 -
Gso16g1235 231 MobiDBLite consensus disorder prediction 15 34 - -
Gso16g1235 231 Pfam Eukaryotic initiation factor 4E 53 211 IPR001040 GO:0003723|GO:0003743|GO:0006413
Gso16g1235 231 SUPERFAMILY eIF4e-like 36 227 IPR023398 -
Gso16g1235 231 PANTHER BNAA10G16710D PROTEIN 36 231 - -
Gso16g1235 231 ProSitePatterns Eukaryotic initiation factor 4E signature. 109 132 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Gso16g1235 231 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1235 Gso-Chr16 31679546 31682699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1235 40 231 Eukaryotic Initiation Factors Gene Family AT5G18110 86.458 1.52e-127 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1235 K03259 - gmx:100499744 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1235 16 31679546 31682699 Gso2g0602 2 6271852 6274968 GST