Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1224 ATGGACATGGATGTTTGCCGAAATATATCAGTTTCTTCAAGTGAGTGTCAGCAAGAGCTTCCCACCCTTGATGACCTTTTCTGTCATCAGAACACGGAAGTGGATTTTGGCATGGAATGGTTATCAGTGTTTGTGGAAGACTGTTTCTCTAGTAGGCCAAGTTGCCTCTTGCCACCCTCTGGTGGTGGTGTTCAAACCACAAGCACTAGCACCAAGCCTTCTTCAGGCACAATAATGCCAAGACCCCAACAAAGTCATCACTGTCCTTTGCAGAATTTTGCTGTGCCAGGGAAAGCAAGGAGCAAGAGAAAGAGACTTTCAGCCCCTAGAACAACAAAACACACCCTAAGCACATGGTCACAACATTTCAGCTCACAGAATGATGGGGTGAGTTCTGACCCTCCTCTCTTGAAACAAGCATATTGGTTGGCTGATAGTGAACTCATAGTCCCCAAGAAGAAGGATGTTGAGCAAGAAGAGGGGGTTGTTGTGGTGGTGAAGAAGGAGAAATTGGGGGATTATTATGATGATGAGGGTGATGAAGTTAACAACAATAATACCAACAATAATAATAATGATAATGTGCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTAGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGCCCTACTTTTGTAAGCTATTTGCATTCCAATTCACACAAGAAAGTCATGGAGATGAGAATGGGTGTTGGTGTTGCTGTTCTTTCTACAGACAAGAAGTAG 837 0.4528 MDMDVCRNISVSSSECQQELPTLDDLFCHQNTEVDFGMEWLSVFVEDCFSSRPSCLLPPSGGGVQTTSTSTKPSSGTIMPRPQQSHHCPLQNFAVPGKARSKRKRLSAPRTTKHTLSTWSQHFSSQNDGVSSDPPLLKQAYWLADSELIVPKKKDVEQEEGVVVVVKKEKLGDYYDDEGDEVNNNNTNNNNNDNVQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMGVGVAVLSTDKK* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1224 278 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Gso16g1224 278 Gene3D - 193 262 IPR013088 GO:0006355|GO:0008270
Gso16g1224 278 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 269 - -
Gso16g1224 278 Pfam GATA zinc finger 203 237 IPR000679 GO:0006355|GO:0043565
Gso16g1224 278 MobiDBLite consensus disorder prediction 59 85 - -
Gso16g1224 278 SMART GATA_3 197 251 IPR000679 GO:0006355|GO:0043565
Gso16g1224 278 PANTHER GATA TRANSCRIPTION FACTOR 3 269 - -
Gso16g1224 278 MobiDBLite consensus disorder prediction 181 196 - -
Gso16g1224 278 MobiDBLite consensus disorder prediction 99 133 - -
Gso16g1224 278 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 261 - -
Gso16g1224 278 MobiDBLite consensus disorder prediction 176 196 - -
Gso16g1224 278 MobiDBLite consensus disorder prediction 111 133 - -
Gso16g1224 278 ProSiteProfiles GATA-type zinc finger domain profile. 201 233 IPR000679 GO:0006355|GO:0043565
Gso16g1224 278 MobiDBLite consensus disorder prediction 60 85 - -
Gso16g1224 278 ProSitePatterns GATA-type zinc finger domain. 203 228 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1224 Gso-Chr16 31568766 31570664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1224 38 265 C2C2-Gata Transcription Factor Family AT4G32890 41.126 4.65e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso16g1224 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1224 - - gmx:100776805 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1224 16 31568766 31570664 Gso2g0593 2 6185565 6187457 GST
Gso19g0937 19 36386221 36387655 Gso16g1224 16 31568766 31570664 PCT
Gso16g0346 16 3896815 3898223 Gso16g1224 16 31568766 31570664 PCT
Gso16g1224 16 31568766 31570664 Gso19g0937 19 36386221 36387655 PCT
Gso16g1224 16 31568766 31570664 Gso16g0346 16 3896815 3898223 PCT