Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1219 ATGTACTATCAGCAGCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGTTGCAAGGAGGCAATGGAGCTGGTGATCCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAAAGGTTCATCGAAGCAGTCAATCAACTCGGAGGAGCAGACAAAGCTACACCAAAAACAGTACTGAAACTAATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGCAGAAGTACAGGATCAGTAAAAATATGCATGGACAAACCAATACTAGCAACAATAAAATTGCATCAACCATGGAAGCAGCAACCGGAATTTCAGAAGCAAGTGGAGTTCAAATGAAACATTTAAGCATAGGCCTCCAGACAAACAAAAATTCAGAAATAAATGATGCATTACAGATGCAAATTGAAGTACAAAGAAGACTACATGAGCAGCTTGAGCAGGTACAGAGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATTTAGGCGCTGAGGGAGTTGAAGCAGCCAAAGTTCAACTATCTGAACTGGCATCCAGAGTATCCCCTCAAAGCCTTGACTCTAAATTTTCAGAACTGAAAGAATTGCAGGTTTTGTGGCCTCAACAAACACAAGAAGGCCAAGCCACTGATTGTTCAATGGGAAGTTTCTTAAACTATAGTGAGGAATCTCAAAGAGACAGAGAAACACATAGCATGAACCTGAATTTGAGAGCCTGTAATGGCCCTCCATTTTCAGTTTCAAAAGGGTGTGCAGAAGAGTCTATGCATTTAAAGCCTGATTACAGATTGTGTGATGAAGTAAAGGAGAATATGATGTTTCTTTCCTCATCAAGTAATAGTAAAGTAGTGAAGGGTGATTTTTTATCAGAGAGGCCATCAAGCCTCTTGTCCATGAATGTAGGAGTTCAAGAAGAAGAAAATTTTGGTAGAACAACGGTTCCAAAGGAAGAAGGTTGGAAGAGAAGAGAGAGCACTGAAACTGGAAGAGTGCCAGTTAAATTGAACTACGAGAAGATTTCTCAAGATTATAGACTTGCAAACTTTGATGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAACGGTTTCAGCTGGAATTGCTAG 1254 0.4107 MYYQQQQQAKNMHALRMHSPTERHMMLQGGNGAGDPGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQQKYRISKNMHGQTNTSNNKIASTMEAATGISEASGVQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSPQSLDSKFSELKELQVLWPQQTQEGQATDCSMGSFLNYSEESQRDRETHSMNLNLRACNGPPFSVSKGCAEESMHLKPDYRLCDEVKENMMFLSSSSNSKVVKGDFLSERPSSLLSMNVGVQEEENFGRTTVPKEEGWKRRESTETGRVPVKLNYEKISQDYRLANFDVKLDLNSHDDNDASSHCQQFDLNGFSWNC* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1219 417 Gene3D - 44 104 - -
Gso16g1219 417 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 416 IPR044848 GO:0003700
Gso16g1219 417 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 416 - -
Gso16g1219 417 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Gso16g1219 417 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 101 IPR006447 GO:0003677
Gso16g1219 417 Pfam Myb-like DNA-binding domain 47 96 IPR001005 -
Gso16g1219 417 Pfam MYB-CC type transfactor, LHEQLE motif 147 194 IPR025756 -
Gso16g1219 417 Coils Coil 149 169 - -
Gso16g1219 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1219 Gso-Chr16 31528640 31531805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1219 77 416 G2-like Transcription Factor Family AT3G04030 47.801 1.12e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso16g1219 Myb_DNA-binding 9.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1219 - - gmx:100789797 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1219 16 31528640 31531805 Gso2g0589 2 6149611 6152850 GST