Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1218 ATGATGGAAGAGCCGGTTGTGGTTAACAAAGGAGATTATGATCATGATCATGATCAGCCTTTGGATTTACCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACTTGTTACCTCACAGAGAAAGTCCTCAATAGAGCCTTCAGTGCAACTGCTATTGGAGAAGCTGATTTCAACAAGTGTGAGCCTTGGGATTTGCCCAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTACCCAACAGGCATGCGAACCAATAGAGCAACCCAATCTGGGTATTGGAAGGCCACTGGCAAAGATAAAGAGATTTTCAAAGGGAAGAACAACCTTGTTGGCATGAAGAAGACCCTTGTTTTCTATAGAGGAAGAGCTCCAAAGGGTGAGAAGACAAATTGGGTTATGCATGAATTCAGATTGGATGGCAAATTCGCATGTTACAACCTTCCCAAGGCTGCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCACAAGAGCAGCACTACTACTACAGATGTTAACAAAAGGGTACTCCCAATAATTAACCCTGGCCTTCTGAGAATGAACTCAAGTAATGGAGAAGATCTATTATTTGATTTCTCTTCTCTCCCACCTCTCGTGGATCCTCTCTTTGACCAAACCTCAAACAAGCACATTGACAATGATTTCAAGGGTACTAATAACACACCTTCATCTTCATCAGCTAAACTACCATCATCAAGTGGCTACTATCTTCCCAACTTCAACAACAACAACAATCAGCAAATGCTTATGATGAAGCCAGAAGAACACAAAATATATGAGATTCCCATCAACAACTATGCCTCCACCAGTCAAGTGGATTTCACTACAACTAATAACCCAATGGGAATTAGCACAAGCAATAATAATATCCTTCTTTCTCAGCCTCAAATTCGAACCCAAAATTCAACCTCAGTACCCTTCAACATGTTCCAAGATTGTTATAATCATACGCACCAAGGAAAACAGTGCAAGATGGAGCAATTCTCCATTGACAGTACTAAGAAACAGCCCGTGGTCAGTGCCTCTCAAGACACGTGCCTCAGCAATGACACTTCCTCGGTGGTTTCAAAGCAAGACAATAACATGGGAAGGAACAAGGCATTGTACGAGGATAATTTTGAAGGTCCTTCATCAGTTGCTACTACCCTCTCAGATTTGGAATGCCTGTGGGATGATTACTGA 1233 0.4234 MMEEPVVVNKGDYDHDHDQPLDLPPGFRFHPTDEEIITCYLTEKVLNRAFSATAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIFKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLDGKFACYNLPKAAKDEWVVCKVFHKSSTTTTDVNKRVLPIINPGLLRMNSSNGEDLLFDFSSLPPLVDPLFDQTSNKHIDNDFKGTNNTPSSSSAKLPSSSGYYLPNFNNNNNQQMLMMKPEEHKIYEIPINNYASTSQVDFTTTNNPMGISTSNNNILLSQPQIRTQNSTSVPFNMFQDCYNHTHQGKQCKMEQFSIDSTKKQPVVSASQDTCLSNDTSSVVSKQDNNMGRNKALYEDNFEGPSSVATTLSDLECLWDDY* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1218 410 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
Gso16g1218 410 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 357 - -
Gso16g1218 410 SUPERFAMILY NAC domain 21 174 IPR036093 GO:0003677|GO:0006355
Gso16g1218 410 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 17 357 - -
Gso16g1218 410 ProSiteProfiles NAC domain profile. 23 174 IPR003441 GO:0003677|GO:0006355
Gso16g1218 410 MobiDBLite consensus disorder prediction 227 247 - -
Gso16g1218 410 Gene3D NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1218 Gso-Chr16 31503221 31505606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1218 1 220 NAC Transcription Factor Family AT5G18270 71.364 2.56e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso16g1218 NAM 3.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1218 - - gmx:100170716 837.41