Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1214 ATGGGAACCCCACAATCCAATAACTTGCCACCAGGGTTTAGGTTCCACCCTACAGATGAAGAGCTCATTCTTCACTACCTAAGGAAGAAGGTTGCCTCCATTCCTTTGCCAGTTGCCATCATTGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGCTAAGGCCGCGTTTGGGGAGAAAGAGTGGTACTTCTTCAGTCCTAGAGACCGGAAGTACCCAAATGGAGCGAGGCCAAACAGGGCAGCAGCTTCAGGGTATTGGAAGGCCACAGGCACTGATAAGAACATAGTGGCATCACTGGCAGGAGGAGTGAGGGAGCACTTTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAAACCCCCAAAGGGTGTCAAAACCAATTGGATCATGCATGAATATCGCCTTGTTGACACCAATAGACCCATTAGGATCAAAGACACCTCCATGAGGTTGGATGACTGGGTTCTATGCCGGATATACAAGAAGTTCAAGCATGCTGTATCTCCAACCACAGAGGCAGCATCAACACTGCAAGTGATCAATGAGCAATTAGATCAAGCAGTGGTAGAAGAAGAGGAGCAAATCAAAGACACCCTTTTACCAATTTTGAAGAATAACAACACTTTTGTCCCTCCTCCACAAGCCACAATACTCATGTCTCAGAAATCCTTATCCTTCTCAAATCTCTTGGATGCCACAGACTACTCCATGCTTAGCACCATCTTATCTGAGAACCACTCCAATAATTACCCTACTCCAAGTGAAACCAGCTTATTCAATAATTGTGAGAATCTGGATCAGGAAATTACCCCCCAAAACTACTACATCAACGATACTAATAGTATTAATAATAATAGCTACTTGTTTCAGAAGAACCCTTCCAACATGGAAAACATTGCTAGGCCAAAACGCCACCTTCCAAACATGGATCATGAGGACAACATGTTATTATACCCTTTAAAGAAATATCATAGTTCCTCTTGCAATTTCCCCAACACCAACCTCCAAAACCAGAATCCACAATGGAACTTCATGTTCAAGCAGCCACTCATGAGTCCTCAATATCTTCAATTTCAGTGA 1092 0.4377 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLPVAIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASLAGGVREHFGVKKALVFYKGKPPKGVKTNWIMHEYRLVDTNRPIRIKDTSMRLDDWVLCRIYKKFKHAVSPTTEAASTLQVINEQLDQAVVEEEEQIKDTLLPILKNNNTFVPPPQATILMSQKSLSFSNLLDATDYSMLSTILSENHSNNYPTPSETSLFNNCENLDQEITPQNYYINDTNSINNNSYLFQKNPSNMENIARPKRHLPNMDHEDNMLLYPLKKYHSSSCNFPNTNLQNQNPQWNFMFKQPLMSPQYLQFQ* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1214 363 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Gso16g1214 363 PANTHER OS01G0104200 PROTEIN 5 309 - -
Gso16g1214 363 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
Gso16g1214 363 ProSiteProfiles NAC domain profile. 9 166 IPR003441 GO:0003677|GO:0006355
Gso16g1214 363 PANTHER NAC TRANSCRIPTION FACTOR 56 5 309 - -
Gso16g1214 363 Gene3D NAC domain 18 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1214 Gso-Chr16 31438853 31441447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1214 7 252 NAC Transcription Factor Family AT3G04070 60.000 1.60e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso16g1214 NAM 5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1214 - - gmx:100817074 755.747