Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1213 ATGAACGATCTTATGACCAAATCCTTCACCAGCTACGTGGACCTGAAGAAGGCTGCAATGAAAGAAGATGTTGATTTGGAAGCTGGTGTTGTTGTTTCTTCTGCTACTCCTCGCAACGTGGAACTTACCTCTTCCACAACACACTTGGACACCGACATGGGTCTCTTCCTCGAAGAGGCTGAGAAGGTGAAGGCTGAGATGGGGTCCCTCCGTGACATCCTCGGCCGCCTCCAGCAGGCCAACGAGGAGAGCAAGTCCTTGCACAAGCCCGAGGCCCTCAAGGTGCTCCGGGCCCGGATCAATGCGGACATTGTCGCTGTGCTCAAGAAGGCCCGGGCGATCCGGGCCCAGCTAGAGGAGATGGACCGCGCCAATGCTGCCAACAGGCGCCTCTCCGGCCTCAAGGAGGGGACGCCCGCGATCTACCGGACCCGGATTGCAGTCACCAATGGGCTCAGGAAGAAGCTGAAAGAGCTCATGATGGAGTTTCAGGGGCTGAGGCAGAGGATGATGAGTGAGTACAAGGATACTGTGGGGAGAAGGTACTTCACAGTGACTGGGGAGCACCCAGATGAGGAAGTGATTGAGAAGATCATCGCCAACGGGAACGAGGAAGAGGTTCTGGGGAAGGCCATACAGGAACACGGGAGAGGGAAGGTTCTGGAAACAGTGGTTGAGATTCAGGACAGGCATGATGCTGCCAAGGAGGTGGAGAAGAGTCTACTGGAGCTGCACCAGGTGTTTCTTGACATGGCTGTGATGGTGGAGGCACAGGGTGAGAAGATGGATGACATTGAGCATCACGTGCTGCATGCTTCTCACTATGTCAAGGATGGGACCAAGAATCTCCAGAGTGCAAAGGAGTACCAGAAGAAGAGCAGGAAGTGGATGTGCATTGGGATCATTCTGTTGCTCATTCTTATTCTGTTTATTGTTATTCCTGTTGTCACCAGTTTAAGCAGTTCTTGA 969 0.5356 MNDLMTKSFTSYVDLKKAAMKEDVDLEAGVVVSSATPRNVELTSSTTHLDTDMGLFLEEAEKVKAEMGSLRDILGRLQQANEESKSLHKPEALKVLRARINADIVAVLKKARAIRAQLEEMDRANAANRRLSGLKEGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEHPDEEVIEKIIANGNEEEVLGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQSAKEYQKKSRKWMCIGIILLLILILFIVIPVVTSLSSS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1213 322 Pfam Syntaxin 56 259 IPR006011 GO:0016020
Gso16g1213 322 Gene3D - 53 181 - -
Gso16g1213 322 SMART SynN_4 48 175 IPR006011 GO:0016020
Gso16g1213 322 Pfam SNARE domain 261 312 IPR000727 -
Gso16g1213 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
Gso16g1213 322 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 315 - -
Gso16g1213 322 PANTHER SYNTAXIN 5 315 IPR045242 -
Gso16g1213 322 ProSitePatterns Syntaxin / epimorphin family signature. 230 270 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso16g1213 322 Gene3D - 220 318 - -
Gso16g1213 322 SMART tSNARE_6 219 286 IPR000727 -
Gso16g1213 322 SUPERFAMILY t-snare proteins 51 279 IPR010989 GO:0016020|GO:0016192
Gso16g1213 322 CDD SynN 53 211 IPR006011 GO:0016020
Gso16g1213 322 Coils Coil 149 169 - -
Gso16g1213 322 CDD SNARE_syntaxin1-like 223 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1213 Gso-Chr16 31412960 31415136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1213 1 322 SNARE and Associated Proteins AT1G08560 64.815 6.71e-134 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1213 K08486 - gmx:100816016 607.446