Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1195 ATGAAACCCTACACGTCATCACCATCATCCTCCAAGTCCAAAAAGAAGCCAACAACAACACAACAAGATCATGAAACAGCATGGGGAGGAAGGTACCTCGGAGTGAGGAGGAGGCCATGGGGAAGGTATGCGGCCGAAATTCGCGACCCTTCCACTAAGGAAAGACATTGGTTGGGCACGTTTGATACCGCAGAGGAGGCCGCCCTAGCATATGATAAGGCGGCCCGCTCCATGCGGGGCTCACGTGCTCGAACCAACTTCATCTATCCGGATACTCCTCCGGGTTCTTCTGTCACCTCCATCCTCTCTCCAGACGAGCAAACCCAAACCCAAATCCACCAGGCCCAAGAAGAGCTCTCCTCTCTATTCAACCCAAACCCGTTTCCACAACCTGACCCGAACCCGCAATTTTCCTTATGCGGGTTTTCGGGTATCCCGAACACTCCTACATTTTCTGCCACCGAAGAAATTGCCTCATCCGGTGGCTATAGCTACAGTTATGGATACACCGAAGGAGGAACCAGCGTGGAGAGTTCACATTTTAAGCTCTTTGATGATGGTGAAACGCAGCTTCCACCATTGCCACCGGATATCACAAGCTCCATGGGGTATGAAATGAGTAATGGGCTTTATGGAAACGATGTCGGGTTTTCGGATCCAAGTTGCGGAGCTAATGCTTCCGGGTCGGGTTACCCGTATGCGGGGTTCGAATCAGGTGATTACGTGGTGCATAGTCCACTCTTTAGTGCAATGCCATCAGTGTCAGATAATGTGGCAACGGGCCATGAGGGTTTTGATTTGGGAAGCTCTTCTTATTTCTTCTGA 825 0.5091 MKPYTSSPSSSKSKKKPTTTQQDHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDKAARSMRGSRARTNFIYPDTPPGSSVTSILSPDEQTQTQIHQAQEELSSLFNPNPFPQPDPNPQFSLCGFSGIPNTPTFSATEEIASSGGYSYSYGYTEGGTSVESSHFKLFDDGETQLPPLPPDITSSMGYEMSNGLYGNDVGFSDPSCGANASGSGYPYAGFESGDYVVHSPLFSAMPSVSDNVATGHEGFDLGSSSYFF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1195 274 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Gso16g1195 274 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Gso16g1195 274 MobiDBLite consensus disorder prediction 1 30 - -
Gso16g1195 274 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 274 - -
Gso16g1195 274 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Gso16g1195 274 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Gso16g1195 274 MobiDBLite consensus disorder prediction 1 26 - -
Gso16g1195 274 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Gso16g1195 274 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 9 274 - -
Gso16g1195 274 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Gso16g1195 274 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Gso16g1195 274 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1195 Gso-Chr16 31200099 31201265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1195 9 265 AP2-EREBP Transcription Factor Family AT5G13910 42.802 1.83e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso16g1195 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1195 K09286 - gmx:100809600 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1195 16 31200099 31201265 Gso2g0563 2 5883438 5884650 GST
Gso16g0381 16 4331731 4332438 Gso16g1195 16 31200099 31201265 PCT
Gso16g1195 16 31200099 31201265 Gso16g0381 16 4331731 4332438 PCT