Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1185 ATGAGTACCAACCAAAACACCACCTTCTTCCCCCTCCCACATGGCCAAATAACTACTTCTGAACTTGTTAATAGCCAGAACAATCCATCCCAGGCTACAAATCAAGGCATTGATGATATTAGGAAAAAGCACTATAGAGGAGTTAGGCAGAGACCATGGGGCAAATGGGCAGCAGAAATAAGAGACCCTAAGAAAGCAGCTAGAGTGTGGCTTGGCACCTTTGACACGGCAGAGGCTGCAGCTATGGCTTATGATGCTGCTGCATTGAGGTTCAAAGGAAACAAAGCAAAGCTCAATTTTCCTGAACGTGTTGTTATGCCAATACCATCACAAACCAATACCAATTACAATAATAACAATACCACTTCTTCATCATCAGCTCCTACTACACAACCTTCTTCTCTTCCACCACCACCATCACAATCTCTACAAAATAGTAGCAATAATAATAGTTCTCTTTCATCAGAAGGGTTTCCAAATCTTGAGGAGTATGCAAGGTTGCTGAATTGTAGCGATGATGATGACTTTCAACGTGTTGCATTGGGGCTCTACCAGCATCACAATAATGAGGATTATATTTATGGTTCATCACAACCACCACCAGTGCCGTTTTTTGTGTCTTCTTATTCTTCTTCTTCTTCTGCAATGGCATCTTCATTTTCTGATTTTCTTGGTCAAGGAGGGAGTGGTTTTGATGAAGAGAATAAGAGGGGGTCGTAG 720 0.4194 MSTNQNTTFFPLPHGQITTSELVNSQNNPSQATNQGIDDIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDAAALRFKGNKAKLNFPERVVMPIPSQTNTNYNNNNTTSSSSAPTTQPSSLPPPPSQSLQNSSNNNSSLSSEGFPNLEEYARLLNCSDDDDFQRVALGLYQHHNNEDYIYGSSQPPPVPFFVSSYSSSSSAMASSFSDFLGQGGSGFDEENKRGS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1185 239 Gene3D AP2/ERF domain 43 103 IPR036955 GO:0003700|GO:0006355
Gso16g1185 239 MobiDBLite consensus disorder prediction 108 130 - -
Gso16g1185 239 PANTHER DNA-BINDING DOMAIN 14 235 IPR044808 GO:0003700|GO:0009873
Gso16g1185 239 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Gso16g1185 239 MobiDBLite consensus disorder prediction 140 156 - -
Gso16g1185 239 MobiDBLite consensus disorder prediction 108 156 - -
Gso16g1185 239 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Gso16g1185 239 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Gso16g1185 239 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Gso16g1185 239 CDD AP2 43 102 IPR001471 GO:0003700|GO:0006355
Gso16g1185 239 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Gso16g1185 239 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Gso16g1185 239 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 14 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1185 Gso-Chr16 31089966 31092264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1185 33 136 AP2-EREBP Transcription Factor Family AT5G61890 63.462 1.16e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso16g1185 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1185 - - gmx:100806383 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1185 16 31089966 31092264 Gso19g0897 19 35278165 35303093 GST
Gso16g1185 16 31089966 31092264 Gso19g0897 19 35278165 35303093 PCT
Gso16g1185 16 31089966 31092264 Gso16g0393 16 4477208 4479422 PCT