Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1183 ATGCTTCCAACGAGAGCTCTCACTCACACTCTCGGCGTTCCCTGGACGGAGCCCGAAAACGACGCCGTTACAGGGGACGCCGCTCTCTTAGCGTCGTTCAAGTCAATGCTGGACCGTGACTGGTACATGGACCAACCTCACTGTGATTTTCTCCAAAACGACGCTGCGTTTTTGGAGCACCCTTTGGGTTCGTCTTCTTCTTCTTCTTCTTCTCTGCCTCAGCAGCAACACTTCGTGGTGCCGCCAAAACCGTGCTACTTCAACGTGAACGGGAATGGTCCTTTGGAATGTGGCTTCGAGTTGGGGTCTCAGAGCAGTTTCCTCGCCCCGTTTCCCGTGAACGCGCTCGAGCTCAGTCTGGACCCCGAGTTCCCGGCGAGCAAACCCGGTGGTGGGTTGATTCGCCGGGAAGAGAAGCAGCGGCCTCTCGACGCACTTGCTCCATCCACTCTGTATCAGAAGCGGACGGAGCGGTGGCGAGAGGCCGGGAAGGCGGAGGAATTGGCGATGCCGCCACCGCCGCCACCGCAGTTGGCGATGGAGAAGAGGAGGAAGAGGGGTGAGCAGGGGGAGGATGAGGGAGGGTTGAATTATGAGTCTGGTGAGGATATGAAGTTGGAGGAGAATGGTGTTGATGCAAATAACAATGATAATGATAATGATGATGATGATGATGATGATGATGGTGATGGTGATGGTGATAATGGGAATGGTGGTGGTGGTGGTGGAGACCAGAAGGGGAAGAAGAAGAAGAAGAAGAAGATGCCGGCGAAGAATCTCATGGCGGAGAGGAGGCGGAGGAAGAAGCTCAATGATAAGTTGTACATGTTAAGGTCTGTTGTGCCTAATATTAGCAAGATGGATAGGGCCTCAATACTAGGGGATGCCATTGACTACTTAAGGGAGTTACAAGTGCGAATTACTGATCTTAATCATGAACTAGAATCAGGCCCGCCTGGCTCATCCCTTCCACCTGCTGCAAGCTTTCACCCTGTGACACCCACTCTGCCTACCCTTCCCTGCCGGGTGAAGGAAGAAATATGTCCTATCTCTCTGCCAAGTCCTAAAAACCAATCAGCAAAGGTGGAGGTTACGGTAAGGGAAGGGGGAGCTGTCAATATCCATATGTTTTGTGCCCACAGACCAGGTCTTTTACTTTCTACCATGAGGGCAATGGATAGCCTTGGATTGGATGTTCAGCAGGCCGTAATCAGTTGTTTCAATGGTTTTTCTTTAGATGTGTTTAGAGCTGAGCAATGCCGAGAAGGCCAGGATGTCCTTCCAGAGCAAATTAAAGAAGTATTGTTGGACACAGCAGGTTTCCATGGAATGATGTGA 1338 0.5157 MLPTRALTHTLGVPWTEPENDAVTGDAALLASFKSMLDRDWYMDQPHCDFLQNDAAFLEHPLGSSSSSSSSLPQQQHFVVPPKPCYFNVNGNGPLECGFELGSQSSFLAPFPVNALELSLDPEFPASKPGGGLIRREEKQRPLDALAPSTLYQKRTERWREAGKAEELAMPPPPPPQLAMEKRRKRGEQGEDEGGLNYESGEDMKLEENGVDANNNDNDNDDDDDDDDGDGDGDNGNGGGGGGDQKGKKKKKKKMPAKNLMAERRRRKKLNDKLYMLRSVVPNISKMDRASILGDAIDYLRELQVRITDLNHELESGPPGSSLPPAASFHPVTPTLPTLPCRVKEEICPISLPSPKNQSAKVEVTVREGGAVNIHMFCAHRPGLLLSTMRAMDSLGLDVQQAVISCFNGFSLDVFRAEQCREGQDVLPEQIKEVLLDTAGFHGMM* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1183 445 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 303 IPR011598 GO:0046983
Gso16g1183 445 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 321 IPR036638 GO:0046983
Gso16g1183 445 MobiDBLite consensus disorder prediction 214 233 - -
Gso16g1183 445 MobiDBLite consensus disorder prediction 179 212 - -
Gso16g1183 445 SMART finulus 260 309 IPR011598 GO:0046983
Gso16g1183 445 PANTHER BHLH TRANSCRIPTIONAL FACTOR 145 445 - -
Gso16g1183 445 Pfam Helix-loop-helix DNA-binding domain 261 304 IPR011598 GO:0046983
Gso16g1183 445 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 145 445 - -
Gso16g1183 445 CDD bHLH_AtAMS_like 257 328 - -
Gso16g1183 445 MobiDBLite consensus disorder prediction 246 264 - -
Gso16g1183 445 MobiDBLite consensus disorder prediction 122 264 - -
Gso16g1183 445 Gene3D - 244 317 IPR036638 GO:0046983
Gso16g1183 445 CDD ACT_UUR-ACR-like 374 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1183 Gso-Chr16 31047873 31052198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1183 31 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 42.765 1.94e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso16g1183 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1183 - - gsj:114390091 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1183 16 31047873 31052198 Gso19g0879 19 35008422 35012131 GST
Gso19g0879 19 35008422 35012131 Gso16g1183 16 31047873 31052198 PCT
Gso16g0406 16 4669131 4673211 Gso16g1183 16 31047873 31052198 PCT
Gso16g1183 16 31047873 31052198 Gso19g0879 19 35008422 35012131 PCT
Gso16g1183 16 31047873 31052198 Gso16g0406 16 4669131 4673211 PCT