Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1180 ATGGCTCCCGTGGACTCTGACACTTTGGGGCGCCATTCTCTGATTCCGAGCTACCTCTATTCCTCTCCCTCGCCGCAGAAGAAGAAGATGGAGGCTTCGAGTTTCGCCATTCATTCTCCGAGAGAGAATCGAAATATAGAGATGTTTTCGCCGTCGTTCTATGCTGCTTGCACCGTTGGTGGAAGCCTCAGCTGTGGCCCCACTCACACCGGCATCACACCTCTTGACGTTGTCAAATGTAACATACAGATTGACCCTGTCAAGTACAAGAACACCAGCACTGGATTTGGAGTTATGTTTAAGGAGCAGGGACTAAGGGGCTTTTTCCGCGGGTGGGGACCTACCCTTGTTGGTTACAGTGCTCAGGGTGCCTTCAAATATGGATTCTATGAGTTCTTCAAGAAGTACTATTCTGACATAGCTGGTCCAGAGTATGCAACCAAGTACAAGACATTGATCTACCTAGCTGGATCCGCATCTGCCGAGTTGATTGCAGGTGTTGCTCTTTGCCCATTTGAGGCAGTGAAGGTCAGAGTTCAAACTCAGCCTGGTTTCGCTAGAGGCCTGGCTGATGGGCTACCAAAGTTGGTCAGAACTGAAGGAGTCTCAGGGTTGTACAAGGGAATTGTTCCTCTATGGGGAAGACAAGTTCCATATACAATGATGAAATTTGCTTCATATGAGAACATAGTTGAGATGATTTATAAGCATGCCATCCCCAAACCAAAATATGAATGCAGCAATTCCCTGCAACTAGGTGTGAGCATTGTCAGTGGATACATGGCTGGTATATTGTGTGCCACTGTCTCTCATCCCGCTGATAACCTCGTCTCTTTCCTGAACAATTCCAAAGGGGCAACGGTTGGTGATGCTGTAAAGAAGCTTGGATTATGGGGTCTGTTTACCCGTGGTCTTCCTCTTCGTATTCTTATGGTTGGAACTCTCACTGGAGCACAATGGGGAATATATGATTCATTCAAAGTTTTTGTGGGGCTGCCAACCACTGGTGGTGTTGCTCCTGCTGCTGTTCTTGCTCCCGCTTCTGCTGCTTAG 1053 0.4786 MAPVDSDTLGRHSLIPSYLYSSPSPQKKKMEASSFAIHSPRENRNIEMFSPSFYAACTVGGSLSCGPTHTGITPLDVVKCNIQIDPVKYKNTSTGFGVMFKEQGLRGFFRGWGPTLVGYSAQGAFKYGFYEFFKKYYSDIAGPEYATKYKTLIYLAGSASAELIAGVALCPFEAVKVRVQTQPGFARGLADGLPKLVRTEGVSGLYKGIVPLWGRQVPYTMMKFASYENIVEMIYKHAIPKPKYECSNSLQLGVSIVSGYMAGILCATVSHPADNLVSFLNNSKGATVGDAVKKLGLWGLFTRGLPLRILMVGTLTGAQWGIYDSFKVFVGLPTTGGVAPAAVLAPASAA* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1180 350 SUPERFAMILY Mitochondrial carrier 55 324 IPR023395 -
Gso16g1180 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 329 IPR018108 -
Gso16g1180 350 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 29 342 IPR044677 GO:0005315|GO:1990547
Gso16g1180 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 149 233 IPR018108 -
Gso16g1180 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 52 136 IPR018108 -
Gso16g1180 350 PANTHER PHOSPHATE CARRIER PROTEIN 29 342 - -
Gso16g1180 350 Pfam Mitochondrial carrier protein 54 138 IPR018108 -
Gso16g1180 350 Pfam Mitochondrial carrier protein 152 237 IPR018108 -
Gso16g1180 350 Gene3D Mitochondrial carrier domain 53 330 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1180 Gso-Chr16 31014595 31018028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1180 34 349 Chloroplast and Mitochondria Gene Families AT5G14040 75.079 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1180 K15102 - gmx:100804257 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1180 16 31014595 31018028 Gso19g0871 19 34860983 34864806 GST
Gso19g0871 19 34860983 34864806 Gso16g1180 16 31014595 31018028 PCT
Gso16g0410 16 4727401 4731011 Gso16g1180 16 31014595 31018028 PCT
Gso16g1180 16 31014595 31018028 Gso19g0871 19 34860983 34864806 PCT
Gso16g1180 16 31014595 31018028 Gso16g0410 16 4727401 4731011 PCT