Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1179 ATGGCGACGAGATATTGGGTAGTGTCTCTCCCCGTTCAAAATTCCGCATCCACTCTCTGGAACAAATTGCAGGAACAAATCTCCAAACACTCCTTCGACACTCCTCTTTACAGATTCAACATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAGTCGAACAGTTTCGTGGAGGGAGTGTCGCACAAGATAAGGCGGCAGATTGAGGAGCTGGAGAGAGTGTCGGGCGTGATGAGCAGTGGTTTGACGGTGGATGGAGTCCCCGTTGATTCCTACTTGACGCGGTTTGTTTGGGATGAAGCGAGGTACCCGACTATGTCGCCATTGAAGGAGATTATCGATGGGATTCACGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGCTTAGCCGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAATATTCACAGAAGGATTGGCTCTCTAGTTATGAAATCTTGACAAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGTGAAGAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCCGAATCACACGACAGCAGGAAGCAAGAGTTAGAGAAATTGGTGGAAGATCAGGAAAGTTTGAGGGGTTCTCTATTGCAGTGGTGTTATACAAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAAGCAGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGCGATAGCTCAAACAGTGCTTACTGGAAGACTGAGGACGAAGGAGTTGGGATGGCTGGCCTAGCAGGTGATGCTGATGCCCACCCTTATGTCTCCTTCACTATCAATCTTGTTTGA 1128 0.4628 MATRYWVVSLPVQNSASTLWNKLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFVEGVSHKIRRQIEELERVSGVMSSGLTVDGVPVDSYLTRFVWDEARYPTMSPLKEIIDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSDLVKPEDIITSENLTTLLAIVPKYSQKDWLSSYEILTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREEGFQIRDFEYSPESHDSRKQELEKLVEDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLAPSVKAEKKVRSILEGLSDSSNSAYWKTEDEGVGMAGLAGDADAHPYVSFTINLV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1179 375 SUPERFAMILY Vacuolar ATP synthase subunit C 1 374 IPR036132 GO:0015078|GO:0033180|GO:1902600
Gso16g1179 375 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Gso16g1179 375 Gene3D - 163 251 - -
Gso16g1179 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 374 - -
Gso16g1179 375 Pfam V-ATPase subunit C 5 368 IPR004907 GO:0033180|GO:0046961|GO:1902600
Gso16g1179 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 374 IPR004907 GO:0033180|GO:0046961|GO:1902600
Gso16g1179 375 CDD V-ATPase_C 5 372 IPR004907 GO:0033180|GO:0046961|GO:1902600
Gso16g1179 375 Gene3D - 41 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1179 Gso-Chr16 31002557 31008048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1179 1 374 Primary Pumps ATPases(2) AT1G12840 81.551 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1179 K02148 - gmx:100803728 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1179 16 31002557 31008048 Gso19g0870 19 34840719 34846149 GST