Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1147 ATGGAAGTACTTCCTTGTTCTGGTGTTCAGTATGCTGGGGGATCTGATTGCTCTCAGTCAAGTTCAGGAACAATGTTTGTAAACCAGGGAGAAAGTGGTGGTCAGGCTAAGTTGGAAGATGATCGACTGAATGACTCATTACAAACGGAAGGGCCTCAGATAGAAAGACAAGGCCAAACACAACAGAATATTTGTGAACCCTTGATTAATATAGCTTGCCAATGTGGTGGAGCTTCATGTTGTGACTGCCAAGTGGAAGGCCAGAAGGAATCCATTAGTTTCCGTGATGTTGAAGATGATGGAATAAATGAGCCTTGCTTAGCCTTTGAAAACTTAGTCTCTATTGCAGATACAAATGAAAGTGAATCACCAAATGGTAGTAGGGAAGTAGAGCTGTCATTTTCTGAACCAACTTGGCTGAAGGGAGATGAGCCTGTGGCATTGTGGGTCAAGTGGAGAGGGAGCTGGCAGGCTGGTATCAAATGTGCAAAGGTTGACTGGCCATTATCAACTTTAAAAGCAAAACCAACTCATGACCGGAAGAAATATTTTGTTATATTTTTTCCTCACACAAGGAATTATTCTTGGGCTGATATGCTGCTTGTTCGATCTATTTATGAGTTTCCCCAGCCTATTGCATACAAAACTCATCAAGCCGGATTGAAAATGGTAAAAGATTTGACTGTTGCACGGCGGTTTATAATGCAAAAGCTAACCATTGGTGTACTGAGCATTGTTGATCAGCTTCATCCTAATGCCTTGCTAGAAACTGCTCGTGATGTGATGGTTTGGAAGGAGTTTGCTATGGAGACTTCTCGTTGTAACAGTTATTCAGATTTTGGCAGAATGCTTCTAGAGTTACAAAATAGCATAGTGAAGCACTACACAGATGCTGACTGGATACAACATTCATCTTACTCTTGGGCTGAACGATGCCAGAATGCAAATAGTGCTGAATCAGTAGAGCTACTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAATGCTCTTTGGGATTCACTGGTGCAATCAACATTAGGTTCGGAGTGGAAAACCTGGAAGCATGATGTGATGAAATGGTTTTCCACATCACCTTCCTTTTCTAGCAGCAAGGATATGCAGCACATGACCTCTGATGGGTTGTTCCAAGTAAGCCTTCAGGTTGGTAGAAAAAGGCCCAAACTTGAAGTTCGCCGTGCAGATACGCATGCTACACTGGTGGAAACAAATGGTTCAGATCAGCCAATTACTCTCAAAACTGACCCAGGTTTCTATAGGAATCAGGACACATTGAATACATTAGAATCTGAGACCTCTACACTCAAAGATATTAAAGAGGTACCTGTGGCAACTGATTTACCTAGCAATTTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTACCGATTCTGAGATCTTGCATGGCAATGGAACACAATCAACACCTATGAATGAGATGGCTGGTAAAAAAGTTGTAGAACCTGGTGCTAAGAATCGACAATGCATAGCTTATGTTGAAGCCAAGGGAAGACAATGTGTGAGATTGGCAAATAATGGTGAGGTATACTGTTGTGCGCATTTGTCATCTCAATTTTTGGGAAACTCAGGGAAAGCTGAAAAACCTGTTTCAGTTGATACTCCAATGTGTGGAGGTACAACTGTTCTTGGTACTAAATGTAAGCATCATGCCCTTCCTGGCTCTTCATTCTGTAAGAAACATCGTCCCCATGCTGAAACAAATGAGATCTCAAATTTAACCCATAATACGCTGAAGAGAAAACATAAAGAAAATCACATTGGTTCAGGGGGCTTGATCAGCAAAGGCATGGTATTGATAAATGCTGAAAGTTCATTGCAAGTAGAACCAGTGCCTGCCATTGATGGTAATTCCTTCCTTGAGAGAAGCAACTTAGATGAGAGGCCCGCCCTTTCTGGTAATGATCAGATTGCAATGGAGGCACTTCACTGTATAGGCTCTCCTCCTTATGATGACAAGGACCCCTGTTTGGAAGCACCAAAGCGGTATATCTTGTATTGTGAGAAGCACCTTCCAAGCTGGCTAAAATGTGCAAGAAATGGAAAGAGTAGGATAATATCAAAAGAAGTGTTCACAGAAATTTTAAGGGACTGCTGCTCATGGAAGCAAAAGGTGCACCTGCATAAAGCATGTGAGCTTTTTTACAGGCTAGTCAAAAGCATTTTGTCACAAAGAAGCCCAGTTTCTAAGGAAGTTCAGTTCCAGCAGGCTTTAACAGAAGCCTCAAAAGATACTAGTGTCGGGGAATTCCTTACAAAGTTGGTTCATAGTGAAAAGGAGAGAATCAAATTGATTTGGGGATTCAATGATGACATAGATGTATCCTCACTTTTGGATGGACTACCTCTCGTTCCTTCCACAGATAATGACAGCTTTGATAATGAAAATGTCATTAAGTGTAAGATTTGCTGTGCAAAATTTCCTGATGACCAAACTCTTGGTAATCATTGGATGGACAACCATAAAAAGGAAGCACAGTGGCTGTTCAGAGGTTATGCTTGTGCCATTTGTCTGGATTCTTTTACAAACAAGAAGCTATTGGAAACCCATGTTCAGGAGAGACATCATGTGCAGTTTGTTGAACAGTGCTTGCTTCTCCAATGCATTCCTTGTGGTAGTCATTTTGGAAATATGGAGCAGTTATGGCTGCATGTTCTATCAGTCCACCCTGTTGAATTCAAGCCATTGAAAGCTCCTGAGCAGCCTTTGCCTTGTGAGGACACTTCGGAAAAACTTGAGCAGGGAAATTCAGCTTTTTTGGAGAATAATTCCAAGAATCCAGGTGGTTTGCGGAGGTTTGTTTGCCGGTTTTGTGGGTTAAAATTTGATTTACTACCTGACCTGGGTCGCCATCATCAAGCTGCTCATATGGGCCACAATCTAGGTACCAGCCGCTCTACAAAAAGGAGTGTTTGTTATTATACGCATAGATTAAAATCTGGCAGACTTGGTCGTCCTAGATTTAAAAATGGTTTGGCAGCAGCATCATCTAGAATCAGGAATAGGGCTAATGCTAATTTAAAGAGACAGATTCAGGCAACAAAGTCACTTGACATGGTGGAAACAACAATAAAACCTCATGTAAATGAGACAGAAAATATTGGTAAGTTGGCAGAATATCAATGCTCGGCAGTTGCAAAGATTTTATTTTCTGAGATTCAGAAGACTAAACTGCGGCCTAACAATTTTGATATCTTGTCAATTGGTCGTTCTGCATGCTGTAAAGTTAGTCTTAAAGCCTCACTGGAGGAGAAATATGGAATTTTGCCTGAAAGGCTCTATTTGAAGGCAGCAAAACTTTGCAGTGATCATAACATTCAGGTGAGTTGGCACCAGGATGGGTTCATTTGTCCTAGGGGTTGTAAGGTTTTGAAGGACCAAAGGCATCTCTCTCCCTTAGCATCTCTTTTTAATGGTTTCCTAAAGCCAAAATCAGTAATTTTATCAGATCCTGCAAGTGACGAGTTGGAGGTGGATGAGTTTCATTACATCCTTGATTCACATCATTTAAAAGTAGGGTCCTTACAAAAGGTTACTGTCTTGTGTGATGACATAAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGTAGATCAAGATATTCTAAACTCTCTTCTTAGACATGGGTCGGATGAGGAAGATATAAATCTCTCTAGGCCTTGGGAGAGCTTTACTTATGTTACAAAGCCAATCCTTGATCAATCACTTAGTCTTGATTCTGAGAGTCTGCAACTAAGATGTGCTTGCTCATTTTCTGCCTGCTGTCCTGAAACATGTGATCACGTCTACCTTTTTGATAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTAGTAGGTTCCCATATGATGAGAATGGTCGAATAATATTGGAGGAAGGTTACCTTGTGTATGAATGCAACCAGATGTGCAAATGCTATAAAACCTGTCCAAACAGAATATTGCAGAATGGATTACGGGTTAAATTGGAAGTCTTTAAAACAGAAAAGAAGGGATGGGCATTAAGGGCTGGTGAGGCTATCCTTCGTGGAACATTTGTGTGTGAGTACATTGGAGAGGTTTTAGATACGCAGGAGGCACAAAACCGGCGCAAAAGATACGGCAAAGAACACTGCAGTTATTTCTATGATGTTGATGATCATGTTAATGATATGAGCAGATTGATTGAAGGACAGGCCCATTATGTCATTGATACAACTAGATTTGGAAATGTCTCTAGGTTTATCAATAACAGCTGCTCGCCCAATCTTGTGAGTTACCAAGTTCTTGTAGAGAGCATGGATTGTGAGCGTGCACATATTGGTCTTTACGCAAATCGAGATATTGCTTTGGGTGAAGAATTGACATATAATTATCATTATGAGCTTGTGCCTGGAGAGGGATCTCCTTGCCTATGTGGTTCCACTAAGTGTCGGGGACGCCTGTACTAG 4491 0.4104 MEVLPCSGVQYAGGSDCSQSSSGTMFVNQGESGGQAKLEDDRLNDSLQTEGPQIERQGQTQQNICEPLINIACQCGGASCCDCQVEGQKESISFRDVEDDGINEPCLAFENLVSIADTNESESPNGSREVELSFSEPTWLKGDEPVALWVKWRGSWQAGIKCAKVDWPLSTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSIYEFPQPIAYKTHQAGLKMVKDLTVARRFIMQKLTIGVLSIVDQLHPNALLETARDVMVWKEFAMETSRCNSYSDFGRMLLELQNSIVKHYTDADWIQHSSYSWAERCQNANSAESVELLKEELFDSILWNDVNALWDSLVQSTLGSEWKTWKHDVMKWFSTSPSFSSSKDMQHMTSDGLFQVSLQVGRKRPKLEVRRADTHATLVETNGSDQPITLKTDPGFYRNQDTLNTLESETSTLKDIKEVPVATDLPSNLTNKWNEIVVEATDSEILHGNGTQSTPMNEMAGKKVVEPGAKNRQCIAYVEAKGRQCVRLANNGEVYCCAHLSSQFLGNSGKAEKPVSVDTPMCGGTTVLGTKCKHHALPGSSFCKKHRPHAETNEISNLTHNTLKRKHKENHIGSGGLISKGMVLINAESSLQVEPVPAIDGNSFLERSNLDERPALSGNDQIAMEALHCIGSPPYDDKDPCLEAPKRYILYCEKHLPSWLKCARNGKSRIISKEVFTEILRDCCSWKQKVHLHKACELFYRLVKSILSQRSPVSKEVQFQQALTEASKDTSVGEFLTKLVHSEKERIKLIWGFNDDIDVSSLLDGLPLVPSTDNDSFDNENVIKCKICCAKFPDDQTLGNHWMDNHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCLLLQCIPCGSHFGNMEQLWLHVLSVHPVEFKPLKAPEQPLPCEDTSEKLEQGNSAFLENNSKNPGGLRRFVCRFCGLKFDLLPDLGRHHQAAHMGHNLGTSRSTKRSVCYYTHRLKSGRLGRPRFKNGLAAASSRIRNRANANLKRQIQATKSLDMVETTIKPHVNETENIGKLAEYQCSAVAKILFSEIQKTKLRPNNFDILSIGRSACCKVSLKASLEEKYGILPERLYLKAAKLCSDHNIQVSWHQDGFICPRGCKVLKDQRHLSPLASLFNGFLKPKSVILSDPASDELEVDEFHYILDSHHLKVGSLQKVTVLCDDISFGKESIPVICVVDQDILNSLLRHGSDEEDINLSRPWESFTYVTKPILDQSLSLDSESLQLRCACSFSACCPETCDHVYLFDNDYDDAKDIFGKPMRSRFPYDENGRIILEEGYLVYECNQMCKCYKTCPNRILQNGLRVKLEVFKTEKKGWALRAGEAILRGTFVCEYIGEVLDTQEAQNRRKRYGKEHCSYFYDVDDHVNDMSRLIEGQAHYVIDTTRFGNVSRFINNSCSPNLVSYQVLVESMDCERAHIGLYANRDIALGEELTYNYHYELVPGEGSPCLCGSTKCRGRLY* 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1147 1496 ProSiteProfiles Pre-SET domain profile. 1262 1338 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso16g1147 1496 ProSiteProfiles Post-SET domain profile. 1480 1496 IPR003616 -
Gso16g1147 1496 ProSitePatterns Zinc finger C2H2 type domain signature. 816 837 IPR013087 -
Gso16g1147 1496 ProSitePatterns Zinc finger C2H2 type domain signature. 884 905 IPR013087 -
Gso16g1147 1496 Pfam SET domain 1352 1472 IPR001214 GO:0005515
Gso16g1147 1496 SUPERFAMILY SET domain 1190 1486 IPR046341 -
Gso16g1147 1496 MobiDBLite consensus disorder prediction 12 31 - -
Gso16g1147 1496 Pfam Pre-SET motif 1201 1333 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso16g1147 1496 SMART preset_2 1198 1325 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso16g1147 1496 ProSiteProfiles SET domain profile. 1341 1473 IPR001214 GO:0005515
Gso16g1147 1496 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1496 - -
Gso16g1147 1496 Pfam Zinc finger C2H2-type, 3 repeats 850 973 IPR040689 -
Gso16g1147 1496 Gene3D SET domain 1190 1496 IPR046341 -
Gso16g1147 1496 Gene3D Classic Zinc Finger 801 874 - -
Gso16g1147 1496 ProSitePatterns Zinc finger C2H2 type domain signature. 951 972 IPR013087 -
Gso16g1147 1496 ProSiteProfiles Zinc finger C2H2 type domain profile. 949 977 IPR013087 -
Gso16g1147 1496 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1496 - -
Gso16g1147 1496 ProSiteProfiles Zinc finger C2H2 type domain profile. 848 871 IPR013087 -
Gso16g1147 1496 MobiDBLite consensus disorder prediction 12 37 - -
Gso16g1147 1496 SMART set_7 1341 1479 IPR001214 GO:0005515
Gso16g1147 1496 SMART c2h2final6 949 972 IPR013087 -
Gso16g1147 1496 SMART c2h2final6 848 871 IPR013087 -
Gso16g1147 1496 SMART c2h2final6 882 905 IPR013087 -
Gso16g1147 1496 SMART c2h2final6 814 837 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1147 Gso-Chr16 30512838 30528687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1147 129 1495 C2H2 Transcription Factor Family AT2G23740 50.504 0.0 1344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso16g1147 Pre-SET 3.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1147 - - gmx:100815492 3047.68