Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1145 ATGGGAATAGCAACACCTTCTTCATCGCTTCCTTCTATTCTCTCTCACTCGAAGACACACCAACAACAAATACATCATTCGAATTCTATGTCCCAAGATTACCACCACCACCACCACCAAGGAATCTTCAGCTTCCCTAATGGGTTCGAAAGATCGGCGGCTACTACGATGACTCACCAAGACCCTCACCACCACCACCACCATCACCACCAGCAACAGCAGATTCGGAGGGACAAAGTGAGGGTGCAAGGCTTCGAGCCGCCACCGCAACAAACTTTGCTACCTATAGAGGAAGACGAATCGGGGAGCCTCCCGGTGTACGAAACCGCCGGAATGTTATCGGAGATGTTCAATTTCCCTCCCGGCGCCGCTGAATTATTGGAACAGCAACAGCAGCAGCAACAACAACAACCAATGGCGATGACGACGACATTTCGGGCATCGCCGTCGGCCAGGGCAGTGGGCAGTGGTGGCAGTGAGTGGTACGGAAACAGACAAGGGATGCTAAGCGGGTTGGGACCGTTGGGAGATTCCAAGAATCATCATCATCATCATGGCAGTGTGAATAGCCGTGACAGTAGCAGCAGCAGCATAGTTCAGAATCAGCATCATCATCATCACAACCACCAGCATCATCAGATGTCGAGCATTAATGCAGACTCTGCAGCTGCCATGCAGCTTTTTCTCATGAACCCTCAAACCACCAGATCCCCTTCTCCCCCTCCACCTCCACCTCCTCCTCCTTCTTCTACTCTCCACATGCTGCTTCCTACTTTCCCTCCAGGCTCAGGAGGGTCTTTCAGTCAATTCACGTGGCTTCCCGACACCACTCAAGAAGGAGGAGGACCGAGCACAGAAGGCCCTGGTCATGGCCAGGGCCTTTCCCTGTCCTTGTCCTCCTCCTTAGAAGCCGCAAAGGCTGAGGAACTAAGGATGGGGAACAGTGGGTTTTTGTATTACAATCAAGCAAGTGGAGGACCCTCTTCTTATAAGAGTACTCTTGGGGGTCATCACCACCAAGCATTGTTGGCACAGACCCACCAGGGACATGTTGGGTTTGGGGCAGCATCATCGTCTACATCATCCTTAGGTGTTGTGAATGCGTTGAGGAATTCAAAATATGCCAAAGCTGCTCAGGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGAGGCCAGTTCAAGAAGAACAAGTTCAATAGGCAACTCTCAAACCCTAGTTCCAATCTTCGAGGTAGCGGCGGCGGTGCTTCTTCGTCTTCCTCAAAGGATGTTCCTCCTTTGTCAGCAGCTGATAGAATTGAGCATCAAAGGAGGAAGGTCAAACTCCTAACCATGCTTGACGAGGTGGATCGGAGATACAGCCACTACTGCGAGCAAATGCACATGGTGGTGAACGCATTCGACATGGTGATGGGGTTTGGCGCCGCGGTGCCATACACGGCGCTGGCACAGAAAGCAATGTCTCGTCACTTTAGGTGCCTAAAGGATGCGATAACAGCACAATTGAAGCATAGTTGTGAGGTATTGGGAGAGAAAGATGGTGCAGGGAATTCGGGGTTGACAAAAGGAGAGACCCCAAGGCTGAAGATGCTGGAACAAAGCTTGAGGCAGCAAAGAGCGTTTCATCAAATGGGGATGATGGAACAGGAGGCTTGGAGGCCCCAGAGAGGGTTGCCAGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCGAGGGTTCGTTTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAAGAGGCCGAAGGGGCAGAAGAAGAGAGGGAGGGGAACCAAAGCAGTAGCAACAACAGTGGCCACCAATTGGCACAAACTCCAACACCCTCAACCACCGCATCGACGGCAACAGCGCCACCACCACCAACAACGACACCACCAACCGGAAAAAGATCCGATTCTGAAAGCGACCCTTCACTTGCACCAATAAATAACACCACCAGCACTGCTGCCATGACCGTCACCGCCTCTGAGGTGACGCAACTGTCGGAGCTGCCCCGAACAATGGTGGCCGATGAATCTTGTAGGCATGGTAGCCTTGTTGCAACGGAGTTTGGGACCGCTTCTGCTGCTTCTGAAATTGGTTCCACTCTGATCAGGTTTGGGACCACCGCCGGTGACGTGTCACTCACGCTAGGGCTTCGCCACGCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGGCATTTAA 2334 0.5184 MGIATPSSSLPSILSHSKTHQQQIHHSNSMSQDYHHHHHQGIFSFPNGFERSAATTMTHQDPHHHHHHHHQQQQIRRDKVRVQGFEPPPQQTLLPIEEDESGSLPVYETAGMLSEMFNFPPGAAELLEQQQQQQQQQPMAMTTTFRASPSARAVGSGGSEWYGNRQGMLSGLGPLGDSKNHHHHHGSVNSRDSSSSSIVQNQHHHHHNHQHHQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPPPPPSSTLHMLLPTFPPGSGGSFSQFTWLPDTTQEGGGPSTEGPGHGQGLSLSLSSSLEAAKAEELRMGNSGFLYYNQASGGPSSYKSTLGGHHHQALLAQTHQGHVGFGAASSSTSSLGVVNALRNSKYAKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNLRGSGGGASSSSSKDVPPLSAADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNAFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCEVLGEKDGAGNSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEEEREGNQSSSNNSGHQLAQTPTPSTTASTATAPPPPTTTPPTGKRSDSESDPSLAPINNTTSTAAMTVTASEVTQLSELPRTMVADESCRHGSLVATEFGTASAASEIGSTLIRFGTTAGDVSLTLGLRHAGNMPEKTPFSVRDFGGI* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1145 777 MobiDBLite consensus disorder prediction 127 216 - -
Gso16g1145 777 MobiDBLite consensus disorder prediction 127 150 - -
Gso16g1145 777 MobiDBLite consensus disorder prediction 623 693 - -
Gso16g1145 777 MobiDBLite consensus disorder prediction 61 75 - -
Gso16g1145 777 Pfam Associated with HOX 369 499 IPR006563 -
Gso16g1145 777 MobiDBLite consensus disorder prediction 262 283 - -
Gso16g1145 777 MobiDBLite consensus disorder prediction 232 296 - -
Gso16g1145 777 MobiDBLite consensus disorder prediction 634 656 - -
Gso16g1145 777 MobiDBLite consensus disorder prediction 235 254 - -
Gso16g1145 777 MobiDBLite consensus disorder prediction 397 425 - -
Gso16g1145 777 MobiDBLite consensus disorder prediction 671 693 - -
Gso16g1145 777 MobiDBLite consensus disorder prediction 397 431 - -
Gso16g1145 777 MobiDBLite consensus disorder prediction 1 78 - -
Gso16g1145 777 SMART prehox3 363 500 IPR006563 -
Gso16g1145 777 CDD homeodomain 552 613 IPR001356 GO:0003677
Gso16g1145 777 Pfam Homeobox KN domain 569 608 IPR008422 GO:0003677|GO:0006355
Gso16g1145 777 ProSiteProfiles 'Homeobox' domain profile. 549 612 IPR001356 GO:0003677
Gso16g1145 777 SMART HOX_1 552 616 IPR001356 GO:0003677
Gso16g1145 777 Gene3D - 555 617 - -
Gso16g1145 777 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 766 - -
Gso16g1145 777 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 90 766 - -
Gso16g1145 777 SUPERFAMILY Homeodomain-like 554 619 IPR009057 -
Gso16g1145 777 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1145 Gso-Chr16 30468856 30477325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1145 363 777 Homeobox Transcription Factor Family AT2G23760 56.329 2.26e-147 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso16g1145 POX 6.4e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1145 - - gmx:100814959 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0503 2 5347053 5355693 Gso16g1145 16 30468856 30477325 GST
Gso1g1545 1 52129796 52137213 Gso16g1145 16 30468856 30477325 PCT
Gso11g0530 11 4740128 4748287 Gso16g1145 16 30468856 30477325 PCT
Gso16g1145 16 30468856 30477325 Gso1g1545 1 52129796 52137213 PCT
Gso16g1145 16 30468856 30477325 Gso11g0530 11 4740128 4748287 PCT