Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1144 ATGGGTTGGTTTACTAAGTTGCTTAAGGGATCCAACCGTAAATCTTCAGGAGGAAGATATCATGGGAAATATGAAGATGACAGAATATCAGAAAATCATGATTGTTCAGCGGATGATTTGATGGATATTGAGAAAGAAGAAATTGATCGGGCCATAGCACTCTCTCTTTCAGAGGCAGATCAGAAAGGGAAAAAAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGTGACGAGGAAGCTGAATGTGTTGAAGTTCAGCAAGATGAAGATGACCATCATGCTAAAATTCAACAGGATGAAGACAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGACAGTGATTCTTTATTTCAACCTTTTGCACACTTATTCCCACCTGTATACAGAATCTGTGCTGGCTGCAATTCCGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCGAGATGTGATGTCTGCAAGAAATTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCGACAAAAATATTGTCCATCGCATGAGGGTGATGGTACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATACCAAGTATCTGTTGCTTGATGATGGTCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTGGAAATACAAGAGTTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAGTTCCAATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACGAGAGGACTTTGCTTGTCTGAAGAGCAAACTATTCCCACTATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACTGGATCAATCCTGGCCCACGAAATGATGCATGCATGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGGTGCATCATCGTCATCATCATCTTCATCTTCCTCATCCTCTTCATCACCTTCGTCCTCTTCATCATCAAAGAAGGGTAAACGTTCCGACTTTGAGAAGAAACTTGGTAAGTATTTCAAACACCAGATTGAGTCAGATAGCTCAGCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCTGTGGCTAAGTATGGACTTAGAAGGACCCTTGACCATATCCGATTGACTGGAAGTTTTCCATATTGA 1590 0.4239 MGWFTKLLKGSNRKSSGGRYHGKYEDDRISENHDCSADDLMDIEKEEIDRAIALSLSEADQKGKKVIEDDSESEDDELCPLSDEEAECVEVQQDEDDHHAKIQQDEDKHLDEVQLEEDEQLARAIQESLSISSPPRSDSDSLFQPFAHLFPPVYRICAGCNSEIGHGRFLSCMGGYWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKKFIPPNSAGLIEYRAHPFWRQKYCPSHEGDGTPRCCSCQRMESVDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLVRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLESEIIPGTGDEGASSSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGKYFKHQIESDSSAAYGDGFREGNQAVAKYGLRRTLDHIRLTGSFPY* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1144 529 Pfam LIM domain 157 211 IPR001781 -
Gso16g1144 529 CDD LIM_DA1 157 209 - -
Gso16g1144 529 SMART lim_4 156 208 IPR001781 -
Gso16g1144 529 PANTHER PROTEIN DA1-RELATED 2 1 529 IPR045218 -
Gso16g1144 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 240 - -
Gso16g1144 529 Gene3D Cysteine Rich Protein 153 214 - -
Gso16g1144 529 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 116 135 IPR003903 -
Gso16g1144 529 MobiDBLite consensus disorder prediction 445 471 - -
Gso16g1144 529 Pfam Protein DA1 306 524 IPR022087 -
Gso16g1144 529 ProSiteProfiles LIM domain profile. 155 215 IPR001781 -
Gso16g1144 529 MobiDBLite consensus disorder prediction 444 477 - -
Gso16g1144 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 153 182 - -
Gso16g1144 529 ProSitePatterns LIM zinc-binding domain signature. 157 191 IPR001781 -
Gso16g1144 529 SMART uim 43 62 IPR003903 -
Gso16g1144 529 SMART uim 116 135 IPR003903 -
Gso16g1144 529 MobiDBLite consensus disorder prediction 9 30 - -
Gso16g1144 529 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1144 Gso-Chr16 30409024 30415333 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso16g1144 DA1-like 9.9e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1144 - - gmx:100813890 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0502 2 5301557 5307911 Gso16g1144 16 30409024 30415333 GST
Gso1g1544 1 52097677 52105394 Gso16g1144 16 30409024 30415333 PCT
Gso11g0531 11 4765654 4772170 Gso16g1144 16 30409024 30415333 PCT
Gso16g1144 16 30409024 30415333 Gso1g1544 1 52097677 52105394 PCT
Gso16g1144 16 30409024 30415333 Gso11g0531 11 4765654 4772170 PCT