Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1143 ATGGACCAGGCCGAATTAACCTCCGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACATGTCCACCAAGCTCATCTCAGGCACCAGCCTTCAGCTCTTAAGGCGCTACGATCACCGGCCAGAGAGTCACAGAGCACAGTTGCTCGATGATGATGGTCCCTCTTATGTTCGCGTGTTTGTTCGTGTTTTGCGTGACATTTTCAAGGAAGATACCGTGGAGTATGTTTTGGCACTGATAGATGAAATGCTTGCTGCAAACCCGAAGAGAGCAAGACTGTTTCATGACAGTGCCCTTGCTGATGAAGATACTTATGAGCCTTTCCTAAGATTGCTCTGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAGTGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAATGGAAAGAAGCCATTTACCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAGTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGGCTGATGGGGTCAAGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCTAGAACCCTTCCGCGACTTATTGATGTTGTCAAGAGTTCTACAAAAGAGAAGGTGGTTAGAGTAGTTGTCTTGACTCTTAAGAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGGCACAAGTTGTCCAGAGTTTAAAAGCACAGGCGTGGAGTGATGAGGACTTGTTGGAGGCCCTAAATTCCCTGGAAGAAGGGCTTAAGGATAATATCAAGAGACTAAGTTCTTTTGATATGTACAAGCAAGAAGTTCTCCTTGGCCATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGATCCTAAGGGTCCTAATAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTGTTGCTTGCTATGACCTTTCACAGTTTATCCAGTGCCATTCTGCTGGACGGATCATTGTGTCAGACCTTAAGGCAAAAGAACGAGTGATGAAACTAATGAATCATGAAAATGCTGAAGTTACTAAAAATGCACTGCTCTGCATCCAGCGGCTTTTCTTAGGTGCAAAGTATGCAAGCTTCTTGCAGGTTTAA 1359 0.4334 MDQAELTSEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRPESHRAQLLDDDGPSYVRVFVRVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSALADEDTYEPFLRLLWKGNWFIQEKSCKILALIVSVRPKNQNGIVSNGEASNGKKPFTTIDDVLIGLVKWLCDQLKKPSHPIRGVPTAINCLATLLKEPVVRSSFVRADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLAQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKRLSSFDMYKQEVLLGHLDWSPMHKDPIFWRENINNFEENDFQILRVLITILDTSNDPRTLAVACYDLSQFIQCHSAGRIIVSDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQV* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1143 452 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 452 - -
Gso16g1143 452 PIRSF V-ATP_synth_H 1 451 IPR004908 GO:0000221|GO:0046961|GO:1902600
Gso16g1143 452 Gene3D - 4 331 IPR011989 -
Gso16g1143 452 SMART arm_5 402 442 IPR000225 GO:0005515
Gso16g1143 452 SMART arm_5 241 282 IPR000225 GO:0005515
Gso16g1143 452 SMART arm_5 195 240 IPR000225 GO:0005515
Gso16g1143 452 Pfam V-ATPase subunit H 330 441 IPR011987 GO:0000221|GO:1902600
Gso16g1143 452 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 452 IPR004908 GO:0000221|GO:0046961|GO:1902600
Gso16g1143 452 SUPERFAMILY ARM repeat 9 442 IPR016024 -
Gso16g1143 452 Pfam V-ATPase subunit H 6 323 IPR004908 GO:0000221|GO:0046961|GO:1902600
Gso16g1143 452 Gene3D - 343 444 IPR038497 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1143 Gso-Chr16 30398061 30404389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1143 1 451 Primary Pumps ATPases(2) AT3G42050 78.714 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1143 K02144 - gmx:100788723 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0501 2 5293356 5300062 Gso16g1143 16 30398061 30404389 GST