Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1135 ATGGAGCAAGAAAATCAATTCTTCTCACTCTCAGACCCTAATCTCATCCTTCGTCTCTCACTATCAATGGGTGGCTCCATAGAGAACACTAGATTTGGGGCAAGTGATGATGATGCTACTAAAGTAGAGGATGATTTTGTCTTTGATATAGATCCTAGCTTGCTAGTGGATTCCCGCAAACTTTTAATTGGCGAACTGATTACAGAACATTCACATTCCATTGTCTACCATGGATGGTATGAATTCAATCCTGTATCTATAAAGCTTATGCTTCCAATGCAAACATCACATGCTACTTCTCAATGTAAAGCAAAGTTTCAACGGGAGGTGAACTTGATATCTAGGGTTAAACATAAAAATATTATAAAGTTTATTGGTGTCTCTGTGGAACCATCGATGATGATAATTACAGAACTTTTGGAAGGTTGTTCACTTCAAAAATATCTAGAGAGCATTTATCCAAGTACTCTAAGTTTAGAGCAATCAATAAGTTTTGCTATGAATATTTCTCAAGTTATGGAGTATTTGCATGAAAATGGCATTATTCATCGGGATCTAAAGCCTGGTAATTTGTTTCTTCCTAAAGACAACATGCAAGTTCTACTTACAAATTTTGAGACAGCTAGAGAGGTGATATCTAGTGAAATGACTTCTGAGGTTGGTACATATCGATATATGGCTCCTGAGTTATTCAGTAAAGATCCACTTTCAAAAGGAGCAAAGAAATGTTATGACCATAAGGCAGATGTTTATAGCTTTTCTATGGTTCTATGGGCGTTAATAAAAAATCAAACTCCATTTAAAGGAAGGAGTAACTTGTTAGCAGCATATGCTACTGCAAAAAACATGAGACCTAGTGTGGAGGAGTTTCCAGAAAATCTTCTCCCTTTATTGCAATCATGTTGGGAAGAAGACCCAAAGCTACGACCTGAATTCTCAGAGATAACTCAAACCCTTGCAAAACTTCTCCACAATTATCACTCAATAAGGATAACGCCTAAGGAAGAAAATTGTCCAACTACAAGTGTGTCAAAACCTATCATCGATTGTGTTGAAGACAACTCCAAACATGTAGATGAGGTCGAGAGTCAGAATATCAATGTTTGCACAAAGGGACAATCTCAGAGCATAATACAAATCCCTAGTCCAATCTTAGCCCAAAACAAGCCTAAAAAGATTTTTAGGAAGTGCAAGTGTTTATGGTTATGTTTGCGCAAATGCTTTGACATTTGTTGA 1236 0.3673 MEQENQFFSLSDPNLILRLSLSMGGSIENTRFGASDDDATKVEDDFVFDIDPSLLVDSRKLLIGELITEHSHSIVYHGWYEFNPVSIKLMLPMQTSHATSQCKAKFQREVNLISRVKHKNIIKFIGVSVEPSMMIITELLEGCSLQKYLESIYPSTLSLEQSISFAMNISQVMEYLHENGIIHRDLKPGNLFLPKDNMQVLLTNFETAREVISSEMTSEVGTYRYMAPELFSKDPLSKGAKKCYDHKADVYSFSMVLWALIKNQTPFKGRSNLLAAYATAKNMRPSVEEFPENLLPLLQSCWEEDPKLRPEFSEITQTLAKLLHNYHSIRITPKEENCPTTSVSKPIIDCVEDNSKHVDEVESQNINVCTKGQSQSIIQIPSPILAQNKPKKIFRKCKCLWLCLRKCFDIC* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1135 411 Gene3D Phosphorylase Kinase; domain 1 51 141 - -
Gso16g1135 411 SUPERFAMILY Protein kinase-like (PK-like) 58 337 IPR011009 -
Gso16g1135 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Gso16g1135 411 PRINTS Tyrosine kinase catalytic domain signature 137 150 IPR001245 GO:0004672|GO:0006468
Gso16g1135 411 PRINTS Tyrosine kinase catalytic domain signature 175 193 IPR001245 GO:0004672|GO:0006468
Gso16g1135 411 PRINTS Tyrosine kinase catalytic domain signature 248 270 IPR001245 GO:0004672|GO:0006468
Gso16g1135 411 PRINTS Tyrosine kinase catalytic domain signature 290 312 IPR001245 GO:0004672|GO:0006468
Gso16g1135 411 Pfam Protein tyrosine and serine/threonine kinase 69 319 IPR001245 GO:0004672|GO:0006468
Gso16g1135 411 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 3 355 - -
Gso16g1135 411 Gene3D Transferase(Phosphotransferase) domain 1 142 358 - -
Gso16g1135 411 SMART serkin_6 61 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1135 411 ProSiteProfiles Protein kinase domain profile. 61 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1135 411 PANTHER SERINE-THREONINE PROTEIN KINASE 3 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1135 Gso-Chr16 30233164 30241106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1135 44 360 MAP Kinase Kinase Kinase AT5G66710 50.000 1.08e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso16g1135 PK_Tyr_Ser-Thr 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1135 - K04427 gmx:106796450 769.615