Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1133 ATGAGAGTTCCCTCATCCCCACAACCCAACAACAACCATTCCCCTACCTCAAACCTCGTCCTCCACACAAACAACAACCCTACTACAACCTTCACCTACGAACCCACCTCGGTCCTTGACCTCTGCCGGAGCCCGAGCCCCGAAAAAAAACTCACTGTTCCCAAGCCAGAACCACAACACAACAACAACAACAACAACCTAAACCTAGACCTGGATGATCATGTCTTGCCTAATTCGGATTGGTGGGAGTCCATCATGAAGGACTTAGCCCTACCCGAAGACTCTCCCACACCCCTTTTGAAGACCAACATCAATCCATCATGCATCCCTGATTTCCCACCTTCTTCTCAAGACCCACCCTTTGATCACCCCCAAGATTTCACCTCTCTCTCAGAAATCTACAACCAAAACCTACCCTACAATTACCCCACCAACACTTTAGAACATTCCTTTTACGACCTAAGCCATAACCACCACCACAACAACAACAACAACGTTAACAACAACAATTGGGACTTCATCGAAGAGCTTATCCGTGCCGCCGATTGCTTCGACAGCAGCCACTTCCAGCTGGCTCAAGCCATACTGGAGCGGCTCAACAACCGGCTCCTTCGCTCTCCCATGGGCAAGCCGCTCCACCGAGCCGCGTTTCACTTCAAAGACGCGCTCCAGTCCATTCTCGCCGGTTCGAACCGGACCAGTTCGAACCGCCTCTCCTCCATGGCTGAGATTGTTCAGACAATTAAAACGTACAAAGCCTTTTCGGGAATTTCACCGATCCCAATGTTCTCCGTTTTCACAACCAACCAAGCCCTACTTGAAACCTTAAATGGATCTTCATTTGTCCACGTCATCGATTTCGAGATCGGCCTAGGGATCCAGTACGCTTCTCTCATGAAAGAGATTGCCGAGAAGGCCGGCGCCGGAGCCTCGCCGCTCCTCCGCATCACCGCCGTCGTGCCGGAGGAGTACGCCGTCGAGAGCCGCCTCGTCCGCGAGAATCTCAACCAGTTCGCGCAGGATCTAGGGATCAGCGCGCAGGTGGACTTCGTGCCGCTTCGGACCTTCGAGACGGTGTCGTTCAAGGCCGTGAGGTTCGTCGACGGCGAGAAGATCGCCGTGTTGCTGTCACCGGCGATTTTCAGCCGCCTCGGAAGCAACGGAGGCAGCGTCGGCGCGTTCCTCGCCGACGTGAGGAGGGTGTCGCCCGGAGTGGTGGTTTTCGTCGATGGCGAGGGGTGGACGGAGGCGGCGGCGGCGGCGTCGTTCCGACGCGGGGTGGTGAGCAGTCTAGAGTTTTATTCCATGATGCTGGAGTCGCTGGACGCGTCGGTGGCGGCGGGGGGAGGCGGCGAGTGGGTGAGGAGGATCGAGATGATGCTGCTGCGGCCAAAGATCTTCGCCGCGGTGGAAGGCGCCCGGCGGAGGACGCCGCCGTGGAGGGAGGCGTTTTACGACGCCGCAATGAGGCCGGTGCAGTTGAGCCAGTTCGCGGATTATCAGGCCGAGTGTTTGCTTGCGAAGGTGCAAATCAGAGGCTTCCACGTGGACAAACGACATGCTGAGTTGGTGCTCTGCTGGCACGAACGAGTCATGGTTGCCACGTCAGCATGGCGGTGTTAG 1623 0.5662 MRVPSSPQPNNNHSPTSNLVLHTNNNPTTTFTYEPTSVLDLCRSPSPEKKLTVPKPEPQHNNNNNNLNLDLDDHVLPNSDWWESIMKDLALPEDSPTPLLKTNINPSCIPDFPPSSQDPPFDHPQDFTSLSEIYNQNLPYNYPTNTLEHSFYDLSHNHHHNNNNNVNNNNWDFIEELIRAADCFDSSHFQLAQAILERLNNRLLRSPMGKPLHRAAFHFKDALQSILAGSNRTSSNRLSSMAEIVQTIKTYKAFSGISPIPMFSVFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAGAGASPLLRITAVVPEEYAVESRLVRENLNQFAQDLGISAQVDFVPLRTFETVSFKAVRFVDGEKIAVLLSPAIFSRLGSNGGSVGAFLADVRRVSPGVVVFVDGEGWTEAAAAASFRRGVVSSLEFYSMMLESLDASVAAGGGGEWVRRIEMMLLRPKIFAAVEGARRRTPPWREAFYDAAMRPVQLSQFADYQAECLLAKVQIRGFHVDKRHAELVLCWHERVMVATSAWRC* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1133 540 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 539 IPR005202 -
Gso16g1133 540 MobiDBLite consensus disorder prediction 1 68 - -
Gso16g1133 540 Pfam GRAS domain family 174 539 IPR005202 -
Gso16g1133 540 MobiDBLite consensus disorder prediction 1 39 - -
Gso16g1133 540 ProSiteProfiles GRAS family profile. 164 539 IPR005202 -
Gso16g1133 540 PANTHER SCARECROW-LIKE PROTEIN 15 6 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1133 Gso-Chr16 30199308 30201479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1133 68 539 GRAS Transcription Factor Family AT4G36710 54.397 1.09e-160 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso16g1133 GRAS 2.2e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1133 - - gmx:100785004 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0490 2 5178375 5180457 Gso16g1133 16 30199308 30201479 GST
Gso1g1521 1 51895737 51897781 Gso16g1133 16 30199308 30201479 PCT
Gso11g0554 11 4971250 4973272 Gso16g1133 16 30199308 30201479 PCT
Gso16g1133 16 30199308 30201479 Gso1g1521 1 51895737 51897781 PCT
Gso16g1133 16 30199308 30201479 Gso11g0554 11 4971250 4973272 PCT