Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1131 ATGCCGGTTGATTTGGACAACGCTTCCACAGCTTCAGGGGAAGCCGCCAGCGTCTCTTCCTCCGGCCACCAAACAAAACCCGCCGTCCCAAAGAAAAAACGAAACCTCCCGGGCATGCCAGATCCCGAGGCAGAGGTGATTGCTCTATCGCCGACGGCGCTCTTGGCAACAAACCGTTTCGTGTGCGAGATATGCAACAAGGGATTCCAGAGGGACCAGAATCTGCAGCTTCACCGGCGGGGCCACAACCTGCCGTGGAAGCTGCGGCAGAGGTCAAGCAAGGAGGTGCGAAAGAGAGTGTACGTGTGCCCCGAGCCCACGTGCGTGCACCACGACCCTGCCAGAGCTTTAGGGGACTTGACGGGGATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTACGCTGTTCAGTCCGATTGGAAGGCGCACTCCAAAGTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAGGAGGGATAGCTTCATCACTCATAGGGCGTTTTGCGATGTGTTGGCGGAGGAGAACGTGAGATCTCACGCTGTTGTGAAAGATAATTCGGAGAATGATTCCAAGGTTTTAACCTTAACCGGTGATTCGCCACCGCTACAGCCTGTCTCTGCAACGGTGGCTACTACTACTACGCAGACAAATAGTGCTATGTCCTGTGGTTTGCAGACGCAGAACCTAGAGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTGCTACTGCTGTAAGTGGGAGCTGTGGCAGCAACAGCACCTGCTCAACAAGCAATGGCGGTGCTACTAGTAATAGCAATAGTAGTAGTAGTGTGTTTGCGGGTTTATTTGCTTCTTCAACAGCATCTGGGAGCCTACAATCTCAAACACCAGCATTCAGTGACTTAATTAGAGCCATGGGGCCTCCGGAACACCCTGCAGATCTTATCTCAGCTCCTTCATCATCCGAGGCCATATCTCTTTGCCTCTCCACCACCAGTGCCTCACCAATCTTCGCAACAGGAGGCCAACAGTATGTGTCGTCGCCACCGCAGCCTGCCATGTCAGCCACTGCATTGCTGCAGAAGGCAGCTCAAATGGGTGCTGCTGCCACAAACGCCTCCCTTCTTCGTGGGTTTGGTATTGTGTCATCATCATCTTTGGCTTCGACCTCATCGGGGCAGCAAAATGGCCTGCAATGGGGCCAGCAGCAGTTAGAATCCGAGAGCGGCTCCGTTCCTGCAGCAGGGCTAGGACTTGGTCTTCCATGTGAAGATGGTGGTTCTGGACTAAAGGAATTGATGATGGGAACACCCTCAATGTTTGGTCCTAAACACACCACTCTTGATTTTCTAGGATTGGGGATGGCTGCTGGTGGCACTGCTGGTGGAGGCTTATCTGCACTTATCACATCTATTGGTGGTGGTTTGGATGTAACTGCAGCCTTTGGCAATGGAGATTTTTCTGGCAAAGATATTGGAGGTAGCTCTTGA 1536 0.5299 MPVDLDNASTASGEAASVSSSGHQTKPAVPKKKRNLPGMPDPEAEVIALSPTALLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDVLAEENVRSHAVVKDNSENDSKVLTLTGDSPPLQPVSATVATTTTQTNSAMSCGLQTQNLELPETNPPQVIEEEPQGATAVSGSCGSNSTCSTSNGGATSNSNSSSSVFAGLFASSTASGSLQSQTPAFSDLIRAMGPPEHPADLISAPSSSEAISLCLSTTSASPIFATGGQQYVSSPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSLASTSSGQQNGLQWGQQQLESESGSVPAAGLGLGLPCEDGGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGTAGGGLSALITSIGGGLDVTAAFGNGDFSGKDIGGSS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1131 511 Gene3D Classic Zinc Finger 42 106 - -
Gso16g1131 511 Gene3D Classic Zinc Finger 115 193 - -
Gso16g1131 511 MobiDBLite consensus disorder prediction 260 285 - -
Gso16g1131 511 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Gso16g1131 511 MobiDBLite consensus disorder prediction 1 43 - -
Gso16g1131 511 MobiDBLite consensus disorder prediction 265 285 - -
Gso16g1131 511 MobiDBLite consensus disorder prediction 407 425 - -
Gso16g1131 511 MobiDBLite consensus disorder prediction 10 26 - -
Gso16g1131 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Gso16g1131 511 MobiDBLite consensus disorder prediction 407 427 - -
Gso16g1131 511 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Gso16g1131 511 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 510 - -
Gso16g1131 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 510 - -
Gso16g1131 511 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Gso16g1131 511 SMART c2h2final6 101 131 IPR013087 -
Gso16g1131 511 SMART c2h2final6 60 82 IPR013087 -
Gso16g1131 511 SMART c2h2final6 136 156 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1131 Gso-Chr16 30155496 30159124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1131 1 511 IDZ Gene Family AT5G66730 57.196 1.79e-174 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso16g1131 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1131 K25869 - gmx:100783947 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0488 2 5156542 5160000 Gso16g1131 16 30155496 30159124 GST
Gso1g1516 1 51858660 51862425 Gso16g1131 16 30155496 30159124 PCT
Gso16g1131 16 30155496 30159124 Gso1g1516 1 51858660 51862425 PCT