Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1128 ATGTCTTCCCCTCATAACTCTGCTCCCCATAATTCCACTCCCGATAACTCCTCCCCTGATGATGCCACTCCCGATAATTCCATTCCCGATAACTCCACCCCTGATGATGCCACTCCTGATAATTCCATTCCCGACAATTTCACACCTGATAATTCTACGCCTGATAACTCCACGCCCGATAACTCCAATGGGTCACACAAAAGTTCCTCAATGTCCCCTCCTTCAATGGAGAGACACAATACTCCAACATCGGGAAAAGATTCGCCAAATAAATCATTGAATGCGAAATCATCGGGTTCAAACAATGACAGTGGTGATAAAGCAGCAATGGGAGCTGGGATTGGAGTAGGGTTTGTTCTTCTTGTGCTAGTCATTGTGTGTTTCATTTGGAGGTGCAAGAAGAAAAAACGAAAGCAAAAGTATTATTATCCAGATCCTTCTCAAGGAAAAGCGAGTAACTATTACAACAGTGGGCAACACCCTCTCCCTAGTTGGCAAGCAGGTTCAGGTCCTCATGGGGGTGACCATGTTATGAGGGTACAACAACAACAAGGAATGGGAATGGGAATGGGAATGGGGATGGGTATGGGAATGGGTCCTCATAGTGGTGGCTGGGGTGCACCACCACATCCTATGATGAGCAGTGGTGAAATGAGCTCCAATTACTCATTGGGAATGAGTTCTTCCTCACCAGGCCTTTCTCTTGCACTCAACGCCAATGGTGGCACATTCACTTATGAGGAACTTGCAGCTGCCACCAAAGGTTTTGCCAATGAGAACATCATAGGACAAGGTGGCTTTGGTTATGTCCACAAGGGAATTTTGCCTAATGGAAAGGAAGTGGCTGTTAAGAGTCTTAAAGCGGGTAGTGGCCAAGGAGAGCGTGAGTTCCAAGCTGAGATTGAAATCATTAGCCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGGGGGCAAAGAATGTTGGTCTATGAATTTGTTCCCAATTCGACTTTGGAACATCACCTTCATGGAAAGGGCATGCCTACGATGGATTGGCCTACTAGAATGCGAATTGCACTTGGATCCGCTAAAGGGCTTGCCTACCTTCATGAAGATTGTAGCCCTCGCATTATCCACCGTGATATTAAAGCTTCTAATGTCCTTCTTGATCAAAGCTTCGAAGCAAAGGTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCTACTCGTGTCATGGGAACATTCGGGTATCTCGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGGAAACGACCTGTGGATTTGACAAATGCCATGGATGAAAGTTTAGTGGATTGGGCTCGACCACTCCTGAATAAAGGGTTGGAGGATGGCAACTTTAGAGAGTTAGTGGATCCATTTTTGGAAGGCAAATACAATCCCCAAGAAATGACAAGAATGGCAGCCTGCGCTGCTGCAAGCATTCGTCATTCTGCCAAGAAACGTTCAAAAATGAGTCAGATTGTAAGAGCACTGGAAGGAGAAGCCTCATTGGAAGACTTGAAAGATGGAATGAAGCTTAAAGGGAGTGGGAATGGGAATAGCAGTGCTTACCCTTCTTCATATGGGAGCTCAGAATATGATACAATGCAATATAATGCTGATATGATAAAGTTCAGACAGGCAATAATGTCAAGCCAAGAATTTAACGACAGCAGTGAGCTTTCCAGTAAGGAGATGAGTTATCATTAG 1800 0.4478 MSSPHNSAPHNSTPDNSSPDDATPDNSIPDNSTPDDATPDNSIPDNFTPDNSTPDNSTPDNSNGSHKSSSMSPPSMERHNTPTSGKDSPNKSLNAKSSGSNNDSGDKAAMGAGIGVGFVLLVLVIVCFIWRCKKKKRKQKYYYPDPSQGKASNYYNSGQHPLPSWQAGSGPHGGDHVMRVQQQQGMGMGMGMGMGMGMGPHSGGWGAPPHPMMSSGEMSSNYSLGMSSSSPGLSLALNANGGTFTYEELAAATKGFANENIIGQGGFGYVHKGILPNGKEVAVKSLKAGSGQGEREFQAEIEIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIALGSAKGLAYLHEDCSPRIIHRDIKASNVLLDQSFEAKVSDFGLAKLTNDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDLTNAMDESLVDWARPLLNKGLEDGNFRELVDPFLEGKYNPQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGEASLEDLKDGMKLKGSGNGNSSAYPSSYGSSEYDTMQYNADMIKFRQAIMSSQEFNDSSELSSKEMSYH* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1128 599 MobiDBLite consensus disorder prediction 1 105 - -
Gso16g1128 599 Pfam Protein tyrosine and serine/threonine kinase 259 525 IPR001245 GO:0004672|GO:0006468
Gso16g1128 599 Gene3D Transferase(Phosphotransferase) domain 1 332 544 - -
Gso16g1128 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Gso16g1128 599 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Gso16g1128 599 ProSiteProfiles Protein kinase domain profile. 256 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1128 599 PANTHER RECEPTOR-LIKE KINASE 21 598 - -
Gso16g1128 599 Gene3D Phosphorylase Kinase; domain 1 225 331 - -
Gso16g1128 599 SUPERFAMILY Protein kinase-like (PK-like) 234 528 IPR011009 -
Gso16g1128 599 SMART serkin_6 256 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1128 599 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 21 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1128 Gso-Chr16 30109152 30114285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1128 100 590 Trihelix Transcription Factor Family AT1G70460 51.509 1.18e-158 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso16g1128 PK_Tyr_Ser-Thr 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1128 - - gmx:100805872 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0482 2 5084257 5089171 Gso16g1128 16 30109152 30114285 GST
Gso11g0570 11 5075020 5079300 Gso16g1128 16 30109152 30114285 PCT
Gso16g1128 16 30109152 30114285 Gso11g0570 11 5075020 5079300 PCT