Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1116 ATGATGCATCATTGTTGTGGAAGCTCCCAGGGGCACGTGATGGGCACGTGCACATGCGGCATGTATCACAGCGAAACCAGCGCTTATGGCTCGATGCTGTTTTCCGTGCCCAACAACAGCGAATATGACATGTATTCGTCCTTCACGCCCTCTCCTTCCTCCGTGGACTGCACGCTCTCCCTCGGAACACCCTCCACGCGTTTAACCCAAGACGACGACCATGACAACGACAACAAACGACACCCCCACCAACGTCGTTCTGGAGTCGCCAATTTTTGCTGGGACCTGCTCCATTCCAAACACAACAACAACAACACGCAATCTCAAAGCAAGTCTAGTAGCAGAGGAAGCAGCAGCAGCAGCAACAACAACAACAACAACAACGACCCTCTCCTCGCTCGTCGTTGCGCCAACTGCGACACCACTTCCACTCCCTTATGGAGGAACGGTCCTCGTGGTCCTAAGTCACTATGCAATGCTTGCGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCGAGCGCCGCCGCCGCCACGTCGACGGCGGTTCCCGGCGGCGAGATGGAATTGGCGCGCGTGTACGGCCACCACCACAACAATTCGTGGTACGCCGCACACTCGCAGAACCAGAAGATGATGATGATGGGTAACGAGTTACGCTTCATGGACGATTCCGAAGACAGGGACTCGGAGAATAACGGCATTCCCTTTCTCTCTTGGAAACTGAACGTTCCAGATAGAACGAGCCTCGTTGATGAACGATGGTGA 765 0.5438 MMHHCCGSSQGHVMGTCTCGMYHSETSAYGSMLFSVPNNSEYDMYSSFTPSPSSVDCTLSLGTPSTRLTQDDDHDNDNKRHPHQRRSGVANFCWDLLHSKHNNNNTQSQSKSSSRGSSSSSNNNNNNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATSTAVPGGEMELARVYGHHHNNSWYAAHSQNQKMMMMGNELRFMDDSEDRDSENNGIPFLSWKLNVPDRTSLVDERW* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1116 254 MobiDBLite consensus disorder prediction 68 84 - -
Gso16g1116 254 PANTHER GATA TRANSCRIPTION FACTOR 18 1 251 IPR044272 GO:0003700|GO:0009908
Gso16g1116 254 CDD ZnF_GATA 135 167 IPR000679 GO:0006355|GO:0043565
Gso16g1116 254 Gene3D - 132 211 IPR013088 GO:0006355|GO:0008270
Gso16g1116 254 Pfam GATA zinc finger 136 170 IPR000679 GO:0006355|GO:0043565
Gso16g1116 254 ProSiteProfiles GATA-type zinc finger domain profile. 130 166 IPR000679 GO:0006355|GO:0043565
Gso16g1116 254 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Gso16g1116 254 MobiDBLite consensus disorder prediction 59 85 - -
Gso16g1116 254 MobiDBLite consensus disorder prediction 101 132 - -
Gso16g1116 254 SMART GATA_3 130 183 IPR000679 GO:0006355|GO:0043565
Gso16g1116 254 ProSitePatterns GATA-type zinc finger domain. 136 161 IPR000679 GO:0006355|GO:0043565
Gso16g1116 254 PANTHER GATA TRANSCRIPTION FACTOR 18 1 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1116 Gso-Chr16 29931137 29933409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1116 8 252 C2C2-Gata Transcription Factor Family AT3G50870 43.299 1.32e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso16g1116 GATA 6.3e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1116 - - gsj:114390318 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0473 2 4994294 4996240 Gso16g1116 16 29931137 29933409 GST
Gso11g0582 11 5201719 5203446 Gso16g1116 16 29931137 29933409 PCT
Gso16g1116 16 29931137 29933409 Gso1g1383 1 50490253 50498992 PCT