Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1107 ATGGACATGAGAGAGCAAGATAAGGTCATAGAGATGCCTAGCACTTTGGATTATAACAACTCCTCTTCTAGTCCCAAGCTATCATCACCAATAGGTGAAAGATGTGATCAATTACCTCCTCATCAATCTCACACATTAGTTTTCACTGATCCACCACAAACTTCTTCACATCATCATAATCTCTATCCCCCTTCACTCCCACCAAACCCTCTTCAACTTCCACAACCTCATCACAGACCCAGAAGAGATCCAGATCCAAGTCCTATTATTTCTCCTCCAAGAACAACACCACCTCAACCACAACCACACACAACAACAACATTATTCAGATACCGAGAATGTCTGAAGAATCATGCTGCAAGCATGGGGGGTCATGTCACAGATGGGTGTGGAGAGTTCATGCCAAATGGAGAAGAGGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGCGAGTGCCACCGCAATTTCCACAGAAAAGAACCTCATCAAGGAGTAGTACTAGAGTCACAACTACTACAACATGTTCTCAACAAAAACAGTAGGAACATAAACATTCTTCATTCTCCACACTCTCATCATGTTCTTCATGGGGTTGTTGGTGGGCCAGTTCAGCCCGTGATGTTGGGCTTTGGGGGATCAGGCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCCTTGATCATAGAGGAGGAGGGAACTTGTTATCATCATCAGTGCAGCAGCCACCACTCTCATCATCATCTTCAAAGAAGAGGTTCAGGACCAAGTTCACACAGCAACAGAAAGATAGGATGATGGAGTTTGCTGAGAAACTTGGGTGGAAGATCCAGAAGCAAGATGAACAGGAACTGCATCAGTTTTGCTCCCAGGTTGGTGTAAGAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAATTGTAA 954 0.4507 MDMREQDKVIEMPSTLDYNNSSSSPKLSSPIGERCDQLPPHQSHTLVFTDPPQTSSHHHNLYPPSLPPNPLQLPQPHHRPRRDPDPSPIISPPRTTPPQPQPHTTTTLFRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKEPHQGVVLESQLLQHVLNKNSRNINILHSPHSHHVLHGVVGGPVQPVMLGFGGSGPAESSSEDLNMFQTLDHRGGGNLLSSSVQQPPLSSSSSKKRFRTKFTQQQKDRMMEFAEKLGWKIQKQDEQELHQFCSQVGVRRQVFKVWMHNSKQAMKKKQL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1107 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 58 315 - -
Gso16g1107 317 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 110 160 IPR006456 -
Gso16g1107 317 Pfam ZF-HD protein dimerisation region 109 161 IPR006456 -
Gso16g1107 317 MobiDBLite consensus disorder prediction 42 62 - -
Gso16g1107 317 MobiDBLite consensus disorder prediction 13 30 - -
Gso16g1107 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 58 315 - -
Gso16g1107 317 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 253 310 IPR006455 -
Gso16g1107 317 MobiDBLite consensus disorder prediction 234 257 - -
Gso16g1107 317 MobiDBLite consensus disorder prediction 1 105 - -
Gso16g1107 317 MobiDBLite consensus disorder prediction 234 259 - -
Gso16g1107 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 111 160 IPR006456 -
Gso16g1107 317 SUPERFAMILY Homeodomain-like 241 314 IPR009057 -
Gso16g1107 317 Gene3D - 239 314 - -
Gso16g1107 317 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1107 Gso-Chr16 29830473 29832477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1107 51 317 ZF-HD Transcription Factor Family AT2G18350 45.387 1.27e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso16g1107 ZF-HD_dimer 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1107 - - gmx:100800005 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0469 2 4943491 4945615 Gso16g1107 16 29830473 29832477 GST
Gso1g1497 1 51633198 51635293 Gso16g1107 16 29830473 29832477 PCT
Gso11g0583 11 5216820 5219416 Gso16g1107 16 29830473 29832477 PCT
Gso16g1107 16 29830473 29832477 Gso1g1497 1 51633198 51635293 PCT
Gso16g1107 16 29830473 29832477 Gso11g0583 11 5216820 5219416 PCT