Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1105 ATGGGAACTGATGGCAGTGAACTGGTAGAGACATTACCAAATCCTCGCTCCTTTAAGGTACATCGTACAATGTGTGCAGAACTCAGGAAATTAGTTGATAGAATCTTGCGGATAATTCCACAGATAGAAGCAGCACGCCCTAGTGGAATGCAGGCTCTGTGTTTGCTGAACGAGGCAATTGATAAAGCCAAACAACTCCTGTTATACTGCTCCGAATCTAGTAAACTCTACCTGGCAATAACAGGGGATTCCATACTCTCAAAATTCCAGAAGGCAAGAAAATCATTAACGCAAAGCTTAGTCCAGATTCTGAATATGGTTCCAGTTATGTTGGCCGCAGAGATTTCTCGACTAATTGGTGATTTTGAGTGTGTGACATTTGTCCTCAACTCTGCTGAACAAGCAGCTGGGAAGGTTATGAAACAATTGCTCCAGCAAGATCCTTCAACATCAGATAAAGATTCAATGGAGGAATCTGAACTAAAAGATTTTCAGTTTGTAGCAGCAAGACTTGGTATTACATCCCCAACGGCCATCTTAATAGAGAGACGATCTATTCAGAAGTTGTTAGAAAAACTCAAACCAAATGACCAGACAAAAGAGATCATCTTGAAAAATCTTTTGTTTCTCCTGATAAAGCACCGAAAATCAATCACAGGGGAACAAATGGAGGTCTACTCTCAAAGTGAAGGACCAATCACAACTCAGAACTCAGATCATGAGTCTCAAAAAAACCTTCATGTCAAGTCATACCTGTACTTGAACCATGGTCAGTATAGAACTCATGCCAGTGAGTTGAGCAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAAAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATACTATATGCCCAAAAACTAAAAAGGAATTGGCTCATATGGCATTGACTCCAAATGTTGCCTTAAAGGACTTGATATTAAACTGGTGCAAAACTAATGGAGTCTCCATTCCTGACCCGCGTAGGCATGTGCAAGATTTTCACTCATGGGAAGCTTCCTCCAACTCCATTAGGAGTTTTGGAAGTTCTTTGTATGATTTGAACTTCCCAATGGATTTTAGTAACATGTCTCTTGGATCATTAGATACCAGTTATAATTCAGATTCCTCCCACACTAAGGCCAACCATAGCTTAAATTTGATGTTGAACAAGAGCAGTGACAATTCGCGCAGGCATCAATCTCATGTACGGATACATGACGCTGATCGGATGCATTTGTCTAAACTCCATGAGCGTCAATGGGAATCTCAATGCCAAGTCATTGAAAATATGAAAATAGATTTCAAATGCAATTACCAAGCTTTTTGCTCTGTGTCATCTGAGAGTTTCATTGACCCACTCACAAGATTTCTGAGCACTGCATGTGAGAGGCACGATGTAAAAGCTCTGCGAGCAGGAACTAAGTTGCTAATGGAATTTATGAAGTGTTGCAGAAATGGTATGACCAATTTAAGTGAAGATACATGCATTATGTTGGCAAGTCTTCTTGACACAGAAGCGATTGGTGAAGCTCTCACCATAATGGAAGAACTGACAGGGAATTGGTATGAAAAAGCTAACATTGCAGCTTCCAGTGTGCTCACTTCTGTTTCAAAGATCCTTGATTCAGGTAATGAAGAGTTCCAACGAAAAGCTATTAAAATAATGTATAATTTTTCATCCAATGGTCAAATTTGTCCCTACATGGTGTCTCTCGGGTGCATCCCTAAATTACTGCCATTTTTTGAAGACAGAACCCTTTTGAGAGACAGTATACATATCTTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTACTGTTGTAGAAACAAAAGGATGCATATCTTCTGTTGTTGAAATACTTGGGACTGGCAGTGATGAGGAAAAAGAACCTGCACTGATTATTCTTCTCTCTTTATGCTCTCAACGTGTGGAATACTGTCAGTTGGTTGTGTCTGAGGGGATTATTCCTTCTCTTGTCAACATCTCCAACAAAGGAAGTGATATGGCAAAGGCTTATGCATTAGAATTACTCCGTCTTTTGAAGGACGACGAGTTTCAGTATGAAGATTGTTGTGAGCCAAATCTCGGTGCCTCTCAAGAACCTAACAATCACTATCAAGAAAAGAAATCATCAAAGAAACCGTCAATTTTGAAGAAACTATCACTGTTCTCAAAATCCAGTTCAGTTGCACCAAAAACCAAAAGATGA 2277 0.3979 MGTDGSELVETLPNPRSFKVHRTMCAELRKLVDRILRIIPQIEAARPSGMQALCLLNEAIDKAKQLLLYCSESSKLYLAITGDSILSKFQKARKSLTQSLVQILNMVPVMLAAEISRLIGDFECVTFVLNSAEQAAGKVMKQLLQQDPSTSDKDSMEESELKDFQFVAARLGITSPTAILIERRSIQKLLEKLKPNDQTKEIILKNLLFLLIKHRKSITGEQMEVYSQSEGPITTQNSDHESQKNLHVKSYLYLNHGQYRTHASELSRLTPPEEYTCPISLRLMYDPVVIASGKTYERMWIQKWFDEGNTICPKTKKELAHMALTPNVALKDLILNWCKTNGVSIPDPRRHVQDFHSWEASSNSIRSFGSSLYDLNFPMDFSNMSLGSLDTSYNSDSSHTKANHSLNLMLNKSSDNSRRHQSHVRIHDADRMHLSKLHERQWESQCQVIENMKIDFKCNYQAFCSVSSESFIDPLTRFLSTACERHDVKALRAGTKLLMEFMKCCRNGMTNLSEDTCIMLASLLDTEAIGEALTIMEELTGNWYEKANIAASSVLTSVSKILDSGNEEFQRKAIKIMYNFSSNGQICPYMVSLGCIPKLLPFFEDRTLLRDSIHILKNLCDTEEGRVTVVETKGCISSVVEILGTGSDEEKEPALIILLSLCSQRVEYCQLVVSEGIIPSLVNISNKGSDMAKAYALELLRLLKDDEFQYEDCCEPNLGASQEPNNHYQEKKSSKKPSILKKLSLFSKSSSVAPKTKR* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1105 758 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Gso16g1105 758 MobiDBLite consensus disorder prediction 717 739 - -
Gso16g1105 758 SUPERFAMILY ARM repeat 460 711 IPR016024 -
Gso16g1105 758 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Gso16g1105 758 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Gso16g1105 758 Gene3D - 605 715 IPR011989 -
Gso16g1105 758 Gene3D - 409 604 IPR011989 -
Gso16g1105 758 CDD RING-Ubox_PUB 277 317 IPR045210 -
Gso16g1105 758 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 751 - -
Gso16g1105 758 SUPERFAMILY RING/U-box 262 348 - -
Gso16g1105 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Gso16g1105 758 PANTHER U BOX DOMAIN-CONTAINING 2 751 - -
Gso16g1105 758 Gene3D - 16 107 IPR036537 GO:0007166
Gso16g1105 758 SMART arm_5 583 621 IPR000225 GO:0005515
Gso16g1105 758 SMART arm_5 622 663 IPR000225 GO:0005515
Gso16g1105 758 SMART arm_5 665 705 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1105 Gso-Chr16 29776063 29781742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1105 15 703 U-box Gene Family AT4G36550 38.691 2.01e-139 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1105 - - gmx:100798951 1470.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0468 2 4905221 4910894 Gso16g1105 16 29776063 29781742 GST
Gso1g1495 1 51590990 51597509 Gso16g1105 16 29776063 29781742 PCT
Gso11g0586 11 5252464 5258257 Gso16g1105 16 29776063 29781742 PCT
Gso16g1105 16 29776063 29781742 Gso1g1495 1 51590990 51597509 PCT
Gso16g1105 16 29776063 29781742 Gso11g0586 11 5252464 5258257 PCT