Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1098 ATGGCTTGGCGATCATTCTCCTACGATGTGTTCCTCAGCTTCCGAAGGGAAGATACTCGTCATGGTTTCACTGGCAATCTCTACAATGTCCTTCGCGAAAGGGGAATTCACACCTTCATTGATGACGACGAGCCCCAGAAAGCGGACCAAATCACAAAAGCACTTGAGGAAGCAATTAAGAACTCCAAGATTTTCATCATCGTGCTCTCTGAAAACTACGCATCTTCTTTCTTTTGCTTAAACGAACTCACTCACATCCTTAACTTTACTAAGGGGTGGGATGATGTGTTGGTTTTGCCAGTTTTTTATAAAGTGGATCCTTCAGATGTCCGACACCATAGAGGTAGTTTTGGAGAAGCACTGGCTAATCATGAAAAGAACTTGAACTCTAATTACATGGGCAAGCTTAAGACCTGGAAGATGGCTCTGCGCCAAGTTTCTAACTTTTCTGGCCATCATTTCCAACCTGATGGGAACAAATATGAATACAAGTTTATTAAGGAGATACTTGAATCGGTGTCTAACAAGCTTAATGGTGATCATTTATATGTTTCGGATGTCCTGGTTGGGCTAGAGTCACCCTTGCTAGAAGTAAAGGAGCTTCTAGATGTTGGACGTGATGATGTTGTTCACATGGTGGGGATCCATGGACTCCCTGGAGTGGGTAAAACAACACTTGCTGTCGCGGTCTATAATTCCATTGTTGATCATTTTGAAGCTTCTTGCTTTCTTGAAAATGTGAGAGAAACTTCCAATAAAAATGGGTTAGTACATCTCCAAAGCGTCCTTCTTTCTAAAACAGATGGAGAAATTAAGTTAGCAAATTCGAGAGAAGGAAGTACCATAATACAGCGTAAGCTCAAGCAAAAGAAGGTTCTTCTGATTCTAGATGATGTTGATGAACATAAACAGTTACAAGCGATTATTGGCAACCCTGATTGGTTTGGTCGTGGTAGTAGAGTCATCATCACCACTCGAGACGAACATTTGTTAGCGCTTCACAAAGTTAAAATAACATATGAGGTGAGAGAGTTGAATAAGAAACATGCTCTTCAATTACTTACTCAGAAGGCTTTTGAGTTGGAAAAAGAAGTTGATCCAAGTTACCATGATATTTTGAATCGAGCGATAACTTATGCTTCAGGCCTCCCATTGGCTCTAGAAGTAATGGGTTCCAACTTATTTGGAAAAAGTATAGAAGAATGGGAATCTGCTCTAGATGGATATGAAAGAATTCCTGATAAAAAGATCTATGACATACTTAAAGTAAGCTATGATGCTTTGAATGAAGATGAGAAAAGTATTTTTCTTGATATTGCTTGTGGCTTCAAAGATTATGAATTGACATATGTTCAAGATATACTTTATGCTCATTATGGTCGTTGCATGAAATATCATATTGGGGTGTTGGTTAAAAAATCTCTGATAAACATTCATTGCTGGCCTACTAAGGTCATGAGATTACATGACTTAATAGAAGACATGGGTAAAGAAATTGTCAGAAGAGAATCACCAACAGAGCCTGGGAAACGTAGCAGGTTATGGTCTCATGAGGATATAAATCAAGTTTTACAAGAAAATAAGGGGACTAGAAAGATTGAAATCATATGTATGAATTTTTCCTCATTTGGAGAAGAAGTGGAATGGGATGGAGATGGCTTCAAGAAGATGGAAAATCTGAAAACACTTATTATCAAGAGTGATTGTTTTTCCAAAGGTCCCAAACATCTTCCTAATACTTTAAGAGTATTGGAATGGTCGAGATGTCCTTCACAGGAATGGCCACGTAATTTTAACCCAAAGCAACTTGCTATATGCAAGTTACCCCATAGTAGCATTACGTCACTCAGGTTGGCCCCATTATTTAAAAAGAGGCTCGTGAATTTGACAAGTTTAATTTTGGACGAGTGTGATAGTTTTAGATGGATACCAGATGTATCTTGTCTCTCAAATTTGGAAAATTTGTCATTTAGAAAGTGTCGGAATTTATTTACAATTCACCATTCAGTTGGTTTATTGGAAAAGCTTAAAATCTTGGATGCTGCAGGTTGCCCAAAGCTTAAGAGTTTTCCACCGTTGAAGTTGACCTCTCTTGAAAGGTTTGAATTTTCGGGTTGTTACAATCTCAAGAGTTTTCCTGAAATATTAGGAAAGATGGAAAATATGACACAACTTTCCTGGACTGGTTGTGCCATAACAAAACTCCCACCTTCATTTCGAAATCTTACTCGGCTTCAATTGTTAGTTCTGACAACTTTTATAAAATATGACTTTGATGCTGCCACCCTCATTTCGAACATCTGCATGATGCCAGAACTAAATCAAATTGATGCTGCCGGTTTGCAATGGAGGCTATTGCCTGACGATGTTTTGAAATTGACCTCAGTCGTGTGTTCAAGCGTTCAATCTCTTACTTTGGAACTGTCAGATGAGCTTCTTCCGCTATTTCTCTCATGTTTTGTAAACGTGAAGAAGTTGAACCTATCATGGAGTAAATTCACAGTTATTCCCGAATGCATCAAAGAATGCCGCTTTTTAACTACCCTTACTTTGGATTATTGCTATCGTCTTCAAGAAATTAGAGGGATTCCTCCAAACTTGAAAATATTATCTGCAATGGATTCCCCAGCCTTGAATTCCTCAAGCATAAGCATGTTGCTGAATCAGGAACTGCATGAGGCTGGAGACACTGACTTTAGTTTGCCAAGAGTACAGATTCCAGAGTGGTTTGAGTGCCATAGTTGGGGACCACCAATTTGTTTCTGGTTCCGTAACAAATTTCCAGCCATAACTGTTTGCATTGTTAAGCTAAATTTAAGTTATCAGTTGCTCAGCGTGATCATTAATAATAAACCGGAATATGTATATAATAAACATGGAATTATTGATTTTTACCGTGGCACCTTCAGACATTCTACATATGTTTTTCGTCTTCAAATGGAAGATAATTTAGATGAAGAACTATCAAAGAGTGAATGGAACCATGCACAGATTGTATGTGGTGAAGAGTCGTGGGACGAATGCGGAATCCATGTATTGAAAGAGCAAAGTAGCATGGAGGATATTCGATTCACTGATCCTAGCTTTTAG 3090 0.3848 MAWRSFSYDVFLSFRREDTRHGFTGNLYNVLRERGIHTFIDDDEPQKADQITKALEEAIKNSKIFIIVLSENYASSFFCLNELTHILNFTKGWDDVLVLPVFYKVDPSDVRHHRGSFGEALANHEKNLNSNYMGKLKTWKMALRQVSNFSGHHFQPDGNKYEYKFIKEILESVSNKLNGDHLYVSDVLVGLESPLLEVKELLDVGRDDVVHMVGIHGLPGVGKTTLAVAVYNSIVDHFEASCFLENVRETSNKNGLVHLQSVLLSKTDGEIKLANSREGSTIIQRKLKQKKVLLILDDVDEHKQLQAIIGNPDWFGRGSRVIITTRDEHLLALHKVKITYEVRELNKKHALQLLTQKAFELEKEVDPSYHDILNRAITYASGLPLALEVMGSNLFGKSIEEWESALDGYERIPDKKIYDILKVSYDALNEDEKSIFLDIACGFKDYELTYVQDILYAHYGRCMKYHIGVLVKKSLINIHCWPTKVMRLHDLIEDMGKEIVRRESPTEPGKRSRLWSHEDINQVLQENKGTRKIEIICMNFSSFGEEVEWDGDGFKKMENLKTLIIKSDCFSKGPKHLPNTLRVLEWSRCPSQEWPRNFNPKQLAICKLPHSSITSLRLAPLFKKRLVNLTSLILDECDSFRWIPDVSCLSNLENLSFRKCRNLFTIHHSVGLLEKLKILDAAGCPKLKSFPPLKLTSLERFEFSGCYNLKSFPEILGKMENMTQLSWTGCAITKLPPSFRNLTRLQLLVLTTFIKYDFDAATLISNICMMPELNQIDAAGLQWRLLPDDVLKLTSVVCSSVQSLTLELSDELLPLFLSCFVNVKKLNLSWSKFTVIPECIKECRFLTTLTLDYCYRLQEIRGIPPNLKILSAMDSPALNSSSISMLLNQELHEAGDTDFSLPRVQIPEWFECHSWGPPICFWFRNKFPAITVCIVKLNLSYQLLSVIINNKPEYVYNKHGIIDFYRGTFRHSTYVFRLQMEDNLDEELSKSEWNHAQIVCGEESWDECGIHVLKEQSSMEDIRFTDPSF* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1098 1029 Gene3D - 344 429 IPR042197 -
Gso16g1098 1029 SUPERFAMILY L domain-like 502 884 - -
Gso16g1098 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 439 IPR027417 -
Gso16g1098 1029 Gene3D - 2 180 IPR035897 -
Gso16g1098 1029 Pfam NB-ARC domain 197 411 IPR002182 GO:0043531
Gso16g1098 1029 CDD AAA 215 328 - -
Gso16g1098 1029 Pfam TIR domain 8 179 IPR000157 GO:0007165
Gso16g1098 1029 Gene3D - 181 339 IPR027417 -
Gso16g1098 1029 SMART AAA_5 209 345 IPR003593 -
Gso16g1098 1029 PANTHER NB-ARC DOMAIN PROTEIN 16 990 - -
Gso16g1098 1029 Gene3D Ribonuclease Inhibitor 512 710 IPR032675 -
Gso16g1098 1029 Gene3D Ribonuclease Inhibitor 711 894 IPR032675 -
Gso16g1098 1029 PRINTS Disease resistance protein signature 212 227 - -
Gso16g1098 1029 PRINTS Disease resistance protein signature 286 300 - -
Gso16g1098 1029 PRINTS Disease resistance protein signature 380 394 - -
Gso16g1098 1029 PRINTS Disease resistance protein signature 671 687 - -
Gso16g1098 1029 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 990 IPR044974 GO:0006952
Gso16g1098 1029 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Gso16g1098 1029 SMART till_3 7 149 IPR000157 GO:0007165
Gso16g1098 1029 ProSiteProfiles TIR domain profile. 6 173 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1098 Gso-Chr16 29676030 29681372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1098 189 870 WRKY Transcription Factor Family AT5G45050 30.791 8.25e-68 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1098 - - gmx:100796826 2087.77