Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1097 ATGGCTCTGCGATCATTCTCTTACGATGTGTTCCTCAGCTTCCGAGGGGAAGATACTCGTTATGGTTTCACTGGCTATCTCTACAATGTCCTTCGGGAAAGGGGAATTCACACCTTCATTGATGACGACGAGCCCCAGGAAGGGGACGAAATCACGACAGCACTTGAGGCGGCTATTGAGAAGTCCAAGATTTTCATCATCGTGCTCTCTGAAAACTACGCATCTTCCTCCTTTTGTTTAAACTCACTCACTCACATCCTTAACTTTACTAAGGAGAATAATGATGTGTTGGTTTTGCCCGTTTTTTATAGAGTGAATCCTTCAGATGTCCGACACCACAGAGGTAGTTTTGGAGAAGCACTGGCTAATCATGAAAAGAAGTCGAACTCTAATAACATGGAGAAGCTTGAGACGTGGAAGATGGCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGGGAACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATCGGTGTCAAACAAGTTTAATCATGATCATTTACATGTTTCGGATGTCCTGGTTGGGCTAGAGTCACCAGTGCTAGAAGTAAAGTCGCTTCTGGATGTTGGACGTGATGATGTCGTCCACATGGTAGGGATCCATGGACTCGCCGGAGTGGGTAAAACAACACTTGCTATCGCGGTCTATAATTCTATTGCTGGCCATTTTGAAGCTTCTTGCTTTCTTGAAAATGTGAAAAGAACTTCCAACACGATAAATGGGTTAGAAAAACTCCAAAGCTTCCTTCTTTCTAAAACCGCTGGAGAAATTAAGTTAACAAATTGGAGAGAAGGAATTCCCATTATAAAGCGTAAGCTCAAGCAAAAAAAGGTTCTTCTTATTCTAGATGATGTTGATGAAGATAAACAGTTACAAGCACTTATTGGCAGCCCTGATTGGTTTGGTCTTGGCAGTAGAATCATCATAACCACTCGAGACGAACATTTGTTAGCTCTACACAATGTTAAAATAACATATAAGGTGAGAGAGTTGAATGAGAAACATGCTCTTCAATTACTTACTCAGAAGGCTTTTGAGTTGGAAAAAGGAATTGATCCAAGTTATCATGATATTTTGAATCGAGCGGTAACTTATGCTTCAGGTCTTCCATTTGTTTTAGAAGTAATAGGTTCCAACTTATTTGGAAAAAGTATAGAAGAATGGAAATCTGCTCTAGATGGATATGAAAGAATTCCTCATAAAAAAATCTATGCATACTTAAAGTAA 1272 0.3962 MALRSFSYDVFLSFRGEDTRYGFTGYLYNVLRERGIHTFIDDDEPQEGDEITTALEAAIEKSKIFIIVLSENYASSSFCLNSLTHILNFTKENNDVLVLPVFYRVNPSDVRHHRGSFGEALANHEKKSNSNNMEKLETWKMALHQVSNISGHHFQHDGNKYEYKFIKEIVESVSNKFNHDHLHVSDVLVGLESPVLEVKSLLDVGRDDVVHMVGIHGLAGVGKTTLAIAVYNSIAGHFEASCFLENVKRTSNTINGLEKLQSFLLSKTAGEIKLTNWREGIPIIKRKLKQKKVLLILDDVDEDKQLQALIGSPDWFGLGSRIIITTRDEHLLALHNVKITYKVRELNEKHALQLLTQKAFELEKGIDPSYHDILNRAVTYASGLPFVLEVIGSNLFGKSIEEWKSALDGYERIPHKKIYAYLK* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1097 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 423 IPR027417 -
Gso16g1097 423 Pfam NB-ARC domain 196 409 IPR002182 GO:0043531
Gso16g1097 423 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 423 IPR044974 GO:0006952
Gso16g1097 423 Gene3D - 345 423 IPR042197 -
Gso16g1097 423 PRINTS Disease resistance protein signature 212 227 - -
Gso16g1097 423 PRINTS Disease resistance protein signature 287 301 - -
Gso16g1097 423 PRINTS Disease resistance protein signature 381 395 - -
Gso16g1097 423 PANTHER NB-ARC DOMAIN PROTEIN 12 423 - -
Gso16g1097 423 Pfam TIR domain 8 179 IPR000157 GO:0007165
Gso16g1097 423 SMART till_3 7 149 IPR000157 GO:0007165
Gso16g1097 423 ProSiteProfiles TIR domain profile. 6 177 IPR000157 GO:0007165
Gso16g1097 423 CDD AAA 215 329 - -
Gso16g1097 423 Gene3D - 180 341 IPR027417 -
Gso16g1097 423 Gene3D - 5 179 IPR035897 -
Gso16g1097 423 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1097 Gso-Chr16 29665866 29669097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1097 189 398 WRKY Transcription Factor Family AT5G45050 33.333 3.80e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1097 - - gmx:547561 846.269