Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1096 ATGGAGACCGAAAACTCACACAAACCTTTATTCAAAATTCTGATGGCTGTGCGATCATTCTCTTACGATGTGTTCCTCAGCTTCCGAGGGGAAGATACTCGTTATTGTTTCACTGGCAATCTCTACAATGTCCTTCGCGAAAGGGGAATTCACACCTTCATTGATGACGACGAGCTCCAGAAAGGGGACCAAATCACGTCAGCACTTCAGGAAGCAATTGAGAAGTCCAAGATTTTCATCATCGTGCTCTCTGAAAACTACGCATCTTCCTCCTTTTGCTTAAACGAACTCACTCACATCCTTAACTTTACTAAGGGGAAGAATGATCTGTTGGTTTTGCCAGTTTTTTATATAGTGGATCCTTCAGATGTCCGACACCACAGAGGTAGTTTTGGAGAAGCACTGGCTAATCATGAAAAGAAGTTGAATTCTACTAACATGGAGAACCTTGAGACATGGAAGATCGCTCTGCACCAAGTTTCTAACATTTCTGGCTATCATTTCCAACATGATGGGGACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATTGGTGTCTAACAAGTTTAATCGTGATCTTTTACATGTTTCGGATGCCCTGGTTGGGCTAGAGTCACCGGTGCTAGAAGTAAAGTCACTTATGGATGTTGGATCTGATGATGTCGTCCAAATGGTGGGGATCCATGGACTTGGCGGAGTGGGTAAAACAACACTTGCTGTCGCAGTCTATAATTCCATTGCTGACCATTTTGAAGCCTCTTGCTTTCTTGAAAATGTGAGAGAAACTTCCAACAAAAAGGGATTACAACATCTCCAAAGCATCCTTCTTTCTAAAACAGTTGGAGAGAAGAAAATTAAGTTAACAAATTGGAGAGAAGGAATTCACATAATAAAGCGTAAGCTCAAGGAAAAGAAGGTTCTTTTGATTCTAGATGATGTTGACGAACAAAAACAGTTACAAGCAATTATTGGCAGCCCTGATTGGTTTGGTGGTGGAAGTAGAGTCATCATCACCACTCGAGATGAACATTTGTTAGCACTTCACAATGTTAAAATAACATATAAGGTGAGAGAGTTGAATGAGAAACATGCTCTTCAATTACTTAGTCAGAAGGCTTTTGAATTGGAAAAAGAAGTTGATCCAAGTTACCATGATATTTTGAATCGAGCGGTAGCTTATGCTTCAGGCCTTCCGTTGGCTTTAGAAGTGATAGGTTCCAACTTATTTGAAAAAAGTATAGAAGAATGGGAATCTGCTCTAAATGGATATGAAAGAATTCCTGATAAAAGCATCTATATGATACTTAAAGTAAGCTATGATGCTTTGAATGAAGATGAGAAAAGTATTTTTCTTGACATTGCTTGTTGCTTCAAAGATTATGAATTGGGAGAGCTCCAAGATATACTTTATGCTCATTATGGTCGTTGTATGAAATATCATATTGGGGTGTTGGTTAAAAAATCTCTCATAAACATTCATTGGTGGGGTAAGCTCATGAGATTACATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGAAGAGAATCACCAACAGAGCCTGGGAAACGTAGCAGGTTATGGTCCCATGAGGATATAAATCAAGTTTTACACGAAAATAAGGGGACTAGAAAGATTGAAATCATATGTATGAATTCTTCCTCATTTGGAGAAGAAGTAGAATGGGATGGAGATGCCTTCAAGAAGATGAAAAATCTCAAAACACTAATTATCAAGAGTGATTGTTTTTCCAAAGGTCCCAAACATCTTCCTAATACTTTAAGAGTATTGGAATGGTGGAGATGTCCTTCACAGGATTGGCCACATAATTTTAACCCAAAGCAACTTGCTATATGCAAGTTACCCGATAGTAGCTTTACATCACTCGGGTTGGCCCCATTATTTGAAAAGAGGCTCGTGAATTTGACAAGTTTAATTTTGGACGAGTGTGATAGTTTAACAGAGATACCAGATGTATCTTGTCTCTCAAATTTGGAAAATTTGTCATTTAGAGGGTGTCCGAATTTATTTACAATTCACCATTCAGTTGGTTTATTGGAAAAGCTTAAAATCTTGGATGCTGAATTTTGCCCAGAGCTTAAGAGTTTTCCACCGTTGAAGTTGACCTCTCTCGAATGGCTTGAACTTTCGTATTGTTTCAGTCTCGAGAGTTTTCCTGAAATATTAGGAAAAATGGAAAATATAACAGAACTTCACTTGATTGAATGTCCCATAACAAAACTCCCACCTTCATTTCGAAATCTTACTCGGCTTCAAGTGTTGAGACTGGGACCCGAAACTGCTCCGTTAATGGACTTTGATGCTGCCACCCTCATTTCGAACATCTGCATGATGCCAGAACTATATGATATTTCAGCTAGCAGTTTGCAATGGAAGCTATTGCCTGACGATGTTTTGAAATTGACCTCAGTTGTGTGTTCAAGCATTCAATCTCTTTCTTTGGAACTGTCAGATGAGCTTCTTCCGCTATTTCTCTCATGTTTTGTAAACGTGAGAAATTTAAATCTATCATGGAGTAAATTCACAGTTATTCCCGAATGCATCAAAGAATGCCGCTTTTTAACTACCCTTACTTTGGATTATTGCGATCGTCTCCAAGAAATTAGAGGGATTCCTCCAAACTTGAAAGAATTCTCTGCATTAGGATGCCTAGCTTTGACTTCCTCAAGCATAGGCATGATACTGAATCAGGAACTGCACGAGGTCGACTTTAGTTTACCAATACTAAAGATTCCAGAGTGGTTTGAGTGCCAGAGTCGGGAACCATGGAGGATATTCGATTATCACTCATATGTATGTGAAGATTCTTGGGACGAATGCGGAATCCATGTATTGAAAGAGTAA 2871 0.3873 METENSHKPLFKILMAVRSFSYDVFLSFRGEDTRYCFTGNLYNVLRERGIHTFIDDDELQKGDQITSALQEAIEKSKIFIIVLSENYASSSFCLNELTHILNFTKGKNDLLVLPVFYIVDPSDVRHHRGSFGEALANHEKKLNSTNMENLETWKIALHQVSNISGYHFQHDGDKYEYKFIKEIVELVSNKFNRDLLHVSDALVGLESPVLEVKSLMDVGSDDVVQMVGIHGLGGVGKTTLAVAVYNSIADHFEASCFLENVRETSNKKGLQHLQSILLSKTVGEKKIKLTNWREGIHIIKRKLKEKKVLLILDDVDEQKQLQAIIGSPDWFGGGSRVIITTRDEHLLALHNVKITYKVRELNEKHALQLLSQKAFELEKEVDPSYHDILNRAVAYASGLPLALEVIGSNLFEKSIEEWESALNGYERIPDKSIYMILKVSYDALNEDEKSIFLDIACCFKDYELGELQDILYAHYGRCMKYHIGVLVKKSLINIHWWGKLMRLHDLIEDMGKEIVRRESPTEPGKRSRLWSHEDINQVLHENKGTRKIEIICMNSSSFGEEVEWDGDAFKKMKNLKTLIIKSDCFSKGPKHLPNTLRVLEWWRCPSQDWPHNFNPKQLAICKLPDSSFTSLGLAPLFEKRLVNLTSLILDECDSLTEIPDVSCLSNLENLSFRGCPNLFTIHHSVGLLEKLKILDAEFCPELKSFPPLKLTSLEWLELSYCFSLESFPEILGKMENITELHLIECPITKLPPSFRNLTRLQVLRLGPETAPLMDFDAATLISNICMMPELYDISASSLQWKLLPDDVLKLTSVVCSSIQSLSLELSDELLPLFLSCFVNVRNLNLSWSKFTVIPECIKECRFLTTLTLDYCDRLQEIRGIPPNLKEFSALGCLALTSSSIGMILNQELHEVDFSLPILKIPEWFECQSREPWRIFDYHSYVCEDSWDECGIHVLKE* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1096 956 SUPERFAMILY "Winged helix" DNA-binding domain 432 539 IPR036390 -
Gso16g1096 956 Gene3D Ribonuclease Inhibitor 768 929 IPR032675 -
Gso16g1096 956 ProSiteProfiles TIR domain profile. 20 191 IPR000157 GO:0007165
Gso16g1096 956 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 937 IPR044974 GO:0006952
Gso16g1096 956 Gene3D - 20 190 IPR035897 -
Gso16g1096 956 Gene3D - 360 445 IPR042197 -
Gso16g1096 956 Pfam TIR domain 22 192 IPR000157 GO:0007165
Gso16g1096 956 Gene3D Ribonuclease Inhibitor 487 767 IPR032675 -
Gso16g1096 956 PRINTS Disease resistance protein signature 226 241 - -
Gso16g1096 956 PRINTS Disease resistance protein signature 302 316 - -
Gso16g1096 956 PRINTS Disease resistance protein signature 396 410 - -
Gso16g1096 956 PRINTS Disease resistance protein signature 708 724 - -
Gso16g1096 956 SUPERFAMILY L domain-like 560 913 - -
Gso16g1096 956 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 166 IPR035897 -
Gso16g1096 956 Pfam NB-ARC domain 221 442 IPR002182 GO:0043531
Gso16g1096 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 455 IPR027417 -
Gso16g1096 956 CDD AAA 229 344 - -
Gso16g1096 956 Gene3D - 191 355 IPR027417 -
Gso16g1096 956 PANTHER NB-ARC DOMAIN PROTEIN 25 937 - -
Gso16g1096 956 SMART till_3 21 163 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1096 Gso-Chr16 29585027 29589185 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1096 19 765 WRKY Transcription Factor Family AT4G12020 29.754 8.92e-70 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1096 - - gmx:100795233 1891.32