Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1092 ATGGCTCTGCGATCATTCTCCTACGATGTGTTCCTCAGCTTCCGAGGGGAAGATACTCGTTATGGTTTCACTGGCAATCTCTACAATGTCCTCCGGGAAAGGGGAATTCACACCTTCATTGATGACGAGGAGCTCCAGAAAGGGGATGAAATCACCACAGCACTTGAGGAGGCAATTGAGAAGTCCAAGATTTTCATCATCGTGCTCTCTGAAAACTACGCATATTCCTCCTTTTGCTTAAACGAACTCACTCACATCCTTAACTTTACTGAGGGGAAGAATGATCCGTTGGTTTTGCCAGTTTTTTATAAAGTGAATCCTTCATATGTCCGACACCACAGAGGTAGTTTTGGAGAAGCACTGGCTAATCATGAAAAGAAGTTGAACTCTAATAACATGGAGAAACTTGAGACGTGGAAGATGGCTCTGCGCCAAGTGTCTAACATTTCTGGCCATCATCTCCAACATGATGGTAATAAATATGAATACAAGTTCATTAAGGAGATAGTTGAATCGGTGTCTAGCAAGTTTAATCGTGATCATTTAGATGTTCCGAATGTCCTGGTTGGGCTAGAGTCACCGGTGCGACAAGTAAAGTCGCTTCTGGATGTTGGACGTGATGATGTCGTCCACATGGTGGGGATCCATGGACTCGCCGGAGTGGGTAAAACAACACTTGCTGTCGCAGTCTATAATTCCATTGCTGATCATTTTGAAGCTTCTTGCTTTCTAGAAAATGTGAGAGAAACTACCAATAAGAAGGGGTTAGAAGATCTCCAAAGTGCCTTTCTTTCTAAAACAGCTGGAGAAATTAAGTTAACAAATTGGAGAGAAGGAATTACCATAATAAAGTGTAAGCTCAAGCAAAAGAAGGTTCTTCTGATTCTAGATGATGTTGATGAACATAAACAGTTACAAGCGATTATTGGCAGCCCTGATTGGTTTGGTCGTGGTAGTAGAGTCATCATCACCACTCGAGACGAACATTTGTTAGCGCTTCACAATGTTAAAATAACATATAAGGTGAGAGAGTTGAATGAGAAACATGCTCTTCAATTACTTACTCACAAGGCTTTTGAGTTGGAAAAAGAAGTTGATCCAAGTTACCATGATATTTTGAATCGAGCGATAACTTATGCTTCAGGCCTCCCATTAGCTCTAGAAGTAATAGGTTCCAACTTACTTGAAAAAAGTATAGAAGAATGGGAATCTGCTCTAGATGGATATGAAAGAATTCCTGATAAAAAGATCTATGACATACTTAAAGTAAGCTATGATGCTTTGAATGAAGATGAGAAAAATATTTTTCTTGACATTGCTTGTTGCTTCAAAGCTTATAAATTGGAAGAGCTCCAAGATATACTTTATGCTCATTATGGTCATTGCATGAAATATCATATTGGGGTGTTGGTTAAAAAATCTCTGATAAACATTCATGGGTCATGGGATTATAAGGTCATGAGATTGCATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGAAGAGAATCACCAACAAATCCTGGGAAACGTAGCAGGTTATGGTCCCATGAGGATATAAATCAGGTTTTACAAGAAAATAAGGGGACTAGTAAGATTGAAATCATATGTATGAATTTTTCCTCATTTGGAGAAGAAGTAGAATGGGATGGAGATGCCTTCAAGAAGATGAAAAATCTCAAAACACTTATCATCAAGAGTGATTGCTTTTCCGAAGGTCCCAAGCATCTTCCTAATACTTTAAGAGTATTGGAATGGTGGAGATGTCCTTCACAGGATTGGCCACATAATTTTAACCCAAAGCAACTTGCTATATGCAAGTTACCCGATAGTAGCTTTACATCAGTCGGGTTGGCCCCATTATTTGAAAAGAGGCTCGTGAATTTGACAAGTTTAATTTTGGACGAGTGTGATAGTTTAACAGAGATACCAGATGTATCTTGTCTCTCAAATTTGGAAAATTTGTCATTTAGAAAGTGTCGGAATTTATTTACAATTCACCATTCAGTTGGTTTATTGGAAAAGCTTAAAATCTTGGATGCTGAATGTTGCCCAGAGCTTAAGAGTTTTCCACCGTTGAAGTTGACCTCTCTTGAAAGGTTTGAACTTTGGTATTGTGTCAGTCTCGAGAGTTTTCCTGAAATATTAGGAAAAATGGAAAATATAACACAACTTTGCTTGTATGAATGTCCCATAACAAAACTCCCACCTTCATTTCGAAATCTTACTCGGCTTCGATCCTTAAGTCTTGGACACCATCACCAAACTGAGCAGTTAATGGACTTTGATGCTGCCACCCTCATTTCGAACATCTGCATGATGCCAGAACTGGATGGTATTTCAGCTCACAATTTGCAATGGAGGCTATTGCCTGAGGATGTTTTGAAATTGACCTCAGTCGTGTGTTCAAGCGTTCAATCTCTTACTTTGAAACTGTCAGATGAGCTTCTTCCGCTATTTCTCTCATGTTTTGTAAATGTGATTGATTTAGAGCTATCAGGGAGTGAATTCACAGTTATTCCCGAATGCATCAAAGAATGCCGCTTTCTATCTACCCTTACTTTGGATCGTTGCGATCGTCTTCAAGAAATTAGAGGGATTCCTCCAAACTTGAAAACTTTCTCTGCAATGGATTCCCCAGCCTTGACTTCCTCAAGCATAAGCATGTTGCTGAATCAGGAACTGCATGAGGCTGGAGACACCGACTTTAGTTTGCCAAGAGTACAGATTCCACAGTGGTTTGAGCACAAGAATCCGGGACGGCCAATTCGTTTCTGGTTCCGTAACGATTTCCCAGCCATAGTTGCTTGCATTGCTAAGTCAGATTTTCAGGGAGTTTTCGATTATCCAGATCTCAGCGTGTTCATTAATGGAAGGGAACATAAACATTACGGTCGTACCCCTGTCCTTGAAAAACCTTGTACAGTTCTTTTTCATCTTCTAATAGAAGATGATTTAGATGTATCACTGTTAGAGAACGAATGGAACCGTGCAGAGATTGTATGTTATGGTTCATGGGACGAATGCGGAATCCATGTATTGAAAGAGCTAAGTAGCATGGAGGATATTCGATTCACTGATCCTTTTAGAAAAGAAAAATTTGTAGTTCAGAGGTTGCGGTTCGGGAAAAAGCAAAGGTTAGCAAGAGTGAAGTTGTTGAGACACAATTTGTAG 3177 0.3966 MALRSFSYDVFLSFRGEDTRYGFTGNLYNVLRERGIHTFIDDEELQKGDEITTALEEAIEKSKIFIIVLSENYAYSSFCLNELTHILNFTEGKNDPLVLPVFYKVNPSYVRHHRGSFGEALANHEKKLNSNNMEKLETWKMALRQVSNISGHHLQHDGNKYEYKFIKEIVESVSSKFNRDHLDVPNVLVGLESPVRQVKSLLDVGRDDVVHMVGIHGLAGVGKTTLAVAVYNSIADHFEASCFLENVRETTNKKGLEDLQSAFLSKTAGEIKLTNWREGITIIKCKLKQKKVLLILDDVDEHKQLQAIIGSPDWFGRGSRVIITTRDEHLLALHNVKITYKVRELNEKHALQLLTHKAFELEKEVDPSYHDILNRAITYASGLPLALEVIGSNLLEKSIEEWESALDGYERIPDKKIYDILKVSYDALNEDEKNIFLDIACCFKAYKLEELQDILYAHYGHCMKYHIGVLVKKSLINIHGSWDYKVMRLHDLIEDMGKEIVRRESPTNPGKRSRLWSHEDINQVLQENKGTSKIEIICMNFSSFGEEVEWDGDAFKKMKNLKTLIIKSDCFSEGPKHLPNTLRVLEWWRCPSQDWPHNFNPKQLAICKLPDSSFTSVGLAPLFEKRLVNLTSLILDECDSLTEIPDVSCLSNLENLSFRKCRNLFTIHHSVGLLEKLKILDAECCPELKSFPPLKLTSLERFELWYCVSLESFPEILGKMENITQLCLYECPITKLPPSFRNLTRLRSLSLGHHHQTEQLMDFDAATLISNICMMPELDGISAHNLQWRLLPEDVLKLTSVVCSSVQSLTLKLSDELLPLFLSCFVNVIDLELSGSEFTVIPECIKECRFLSTLTLDRCDRLQEIRGIPPNLKTFSAMDSPALTSSSISMLLNQELHEAGDTDFSLPRVQIPQWFEHKNPGRPIRFWFRNDFPAIVACIAKSDFQGVFDYPDLSVFINGREHKHYGRTPVLEKPCTVLFHLLIEDDLDVSLLENEWNRAEIVCYGSWDECGIHVLKELSSMEDIRFTDPFRKEKFVVQRLRFGKKQRLARVKLLRHNL* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1092 1058 PRINTS Disease resistance protein signature 212 227 - -
Gso16g1092 1058 PRINTS Disease resistance protein signature 286 300 - -
Gso16g1092 1058 PRINTS Disease resistance protein signature 380 394 - -
Gso16g1092 1058 PRINTS Disease resistance protein signature 672 688 - -
Gso16g1092 1058 Pfam TIR domain 8 176 IPR000157 GO:0007165
Gso16g1092 1058 Gene3D Ribonuclease Inhibitor 530 711 IPR032675 -
Gso16g1092 1058 SUPERFAMILY "Winged helix" DNA-binding domain 415 526 IPR036390 -
Gso16g1092 1058 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Gso16g1092 1058 ProSiteProfiles TIR domain profile. 6 177 IPR000157 GO:0007165
Gso16g1092 1058 Gene3D - 181 340 IPR027417 -
Gso16g1092 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 439 IPR027417 -
Gso16g1092 1058 CDD AAA 215 328 - -
Gso16g1092 1058 Gene3D - 344 429 IPR042197 -
Gso16g1092 1058 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 992 IPR044974 GO:0006952
Gso16g1092 1058 Pfam NB-ARC domain 192 412 IPR002182 GO:0043531
Gso16g1092 1058 Gene3D - 2 180 IPR035897 -
Gso16g1092 1058 Gene3D Ribonuclease Inhibitor 712 898 IPR032675 -
Gso16g1092 1058 PANTHER NB-ARC DOMAIN PROTEIN 12 992 - -
Gso16g1092 1058 SUPERFAMILY L domain-like 555 889 - -
Gso16g1092 1058 SMART till_3 7 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1092 Gso-Chr16 29514971 29519759 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1092 5 760 WRKY Transcription Factor Family AT4G12020 27.898 1.20e-68 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1092 - - gmx:100793122 2145.16