Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1076 ATGGAGTTTGCCAGTTTCCATCTTCAGCAGCATCAGCTCCAAGAAGAATCTGCTCAGTTTAGTATAATTTCAACAACCCCACCACCTGACTCTAAACCTTCCACTACTATCACTAATCAATCATGGATCCCAAGCAACATGTACAATGGTTATAACAGTGGGTTTCTAACTGATCAGAGCTTCACAAATTCAAGAGAACTACAACACAAGCACGCCATGACTGATTCACTTAGAATTTCAACAAGGCAAGCCTTTGGTTTTAACAATGGAAAAAGCCTCATAACTCAGCATCCAGTTGGTGATAATAATAGTCTCTTTCCTGCAAGAATATTCAAAGGTGAAATGATCGACAACACCTTCATGAAGGCTATGGAGGAATCATCACTAGTTCCAATTCATCATGAACCACGATATTCTTCTCCTAGTTTCTTATCTAGTATTGGTGTAACTGTTGGTGAAGAGTTTTATCCTAATGACAAGCCTATAGATGGAGGGACCCCAAGCAAGAGATATAATAATAGCTTTGGCGATGTTGCCTTAATTTCAAATTTACCAACCCTAGATATGGCCTCTTCCTTAGTTTCATGTTCTTTGGGATTAAACCCTAAAATGTTTGATCTGCATACAAGTTATGGTGGGAGTTGTGGAATCCAACCTGGCTATGATACTTTTGGTATTAACGAGAGCATATCTTTGAGTCACAGCTATGAGCATGGCCGTGAAAACAGTCCATCAAACAGCACAAGTAAAATTTCATCATTTGTAAGTGAAGTTGCAACGACGAAAAGGCCAAGCAATTGCTCTCCACCAAAAGAATCTGAAGCAAAAGCTAAGAAGTCAAGGCCATCATGCCCGCCCCTGAAGCAGGTAAGAAAGGAGAAATTAGGGGATAGGATCCAAACTCTTCAGAGACTAGTGGCACCTTTCGGAAAGACCAGCACCGCCTCTGTCTTGAGTGAAGCAATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCGCGCAAAGCAAGCCCTCTAGAGTGGTGCAGCTGGATTCAAATAAGGTAGATAGAAGAGAATTCAAGCCCGACCTTAGAAGCAGAGGCTTGTGTCTTGTGCCCCTTTCTTACGCATCATTCATTCATCGTTGTGTTTAG 1164 0.4149 MEFASFHLQQHQLQEESAQFSIISTTPPPDSKPSTTITNQSWIPSNMYNGYNSGFLTDQSFTNSRELQHKHAMTDSLRISTRQAFGFNNGKSLITQHPVGDNNSLFPARIFKGEMIDNTFMKAMEESSLVPIHHEPRYSSPSFLSSIGVTVGEEFYPNDKPIDGGTPSKRYNNSFGDVALISNLPTLDMASSLVSCSLGLNPKMFDLHTSYGGSCGIQPGYDTFGINESISLSHSYEHGRENSPSNSTSKISSFVSEVATTKRPSNCSPPKESEAKAKKSRPSCPPLKQVRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSIPYMKSAQSKPSRVVQLDSNKVDRREFKPDLRSRGLCLVPLSYASFIHRCV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1076 387 Gene3D - 286 348 IPR036638 GO:0046983
Gso16g1076 387 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 1 383 - -
Gso16g1076 387 MobiDBLite consensus disorder prediction 235 268 - -
Gso16g1076 387 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 383 - -
Gso16g1076 387 MobiDBLite consensus disorder prediction 235 289 - -
Gso16g1076 387 CDD bHLH_AtbHLH_like 285 336 IPR045239 -
Gso16g1076 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 328 IPR011598 GO:0046983
Gso16g1076 387 MobiDBLite consensus disorder prediction 272 289 - -
Gso16g1076 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 340 IPR036638 GO:0046983
Gso16g1076 387 SMART finulus 285 334 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1076 Gso-Chr16 29241239 29245867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1076 245 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 52.740 7.24e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1076 - - gmx:100785177 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0449 2 4759393 4763327 Gso16g1076 16 29241239 29245867 GST