Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1069 ATGGCGGGGTTATTCTCATTAGGTGGAGGAGGGCGAGGAGGCGATAACCAAGAAGAAAACAACAACCAAAGCAGCGAGATTCCACCAGCGGAGACCCTATTCTGGTACAGCAAAAACGACGACGTTTCATCCTATCACCGAGGGTTTGAGCTATGGAACCAGCATCAGGAGCACCAGCACCATCACCACGCGATGCATCATCCACATGCGCGTCCACTCCTGCAGCGAGATCTTTACTCCTCCGGAGTGGGACCCAGCCGCGGCGGCATCTCCGATGATCACTCGTCGTCGAGATCGGCGGCGTTCGTGGCGATGCGCGCAGCCGGGGCCGAGGGAGGAGGAATAAGCTGTCAGGATTGCGGCAACCAGGCCAAAAAAGACTGCCCTCACATGCGGTGCAGGACGTGCTGCAAGAGCCGCGGCTATGACTGCCAAACCCATGTGAAAAGCACATGGGTTCCGGCTTCTAAACGCCGTGAGCGCCAACAGCAGCTCATGGCGTTACATCAGCAACAGCAAGAACAACAACAACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAATTCAGATGCGTGAGGGTTAGCTGCGTGGAGGACTCTGATGATAGATACGCATACCAAACCGCTGTGAGCATTGGAGGACATGTGTTCAAAGGAATCCTCTATGACTATGGTCCTGAGAATAGTAACAACAACAACAGTAATAATAATAGTAATAATTACATGGCTGGAGAAACCTCTGCTGTTGCTGCAACAGCTCAGCCCTTGAACCTTGCTGCTGCTGCTTCTTCAGCTGCACTTATTGATCCTTCGTCTTTGTATTCAGCTCCGGCTAACGCATTCATGGCTGGTAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 954 0.5252 MAGLFSLGGGGRGGDNQEENNNQSSEIPPAETLFWYSKNDDVSSYHRGFELWNQHQEHQHHHHAMHHPHARPLLQRDLYSSGVGPSRGGISDDHSSSRSAAFVAMRAAGAEGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLMALHQQQQEQQQQRDISKRPRDSRLSSSGLEEEGHFPSVVSSPAEFRCVRVSCVEDSDDRYAYQTAVSIGGHVFKGILYDYGPENSNNNNSNNNSNNYMAGETSAVAATAQPLNLAAAASSAALIDPSSLYSAPANAFMAGSGTQFFPHTRS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1069 317 PANTHER PROTEIN SHORT INTERNODES 1 315 - -
Gso16g1069 317 MobiDBLite consensus disorder prediction 155 201 - -
Gso16g1069 317 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 200 248 IPR006511 -
Gso16g1069 317 MobiDBLite consensus disorder prediction 15 29 - -
Gso16g1069 317 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Gso16g1069 317 Coils Coil 159 179 - -
Gso16g1069 317 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 315 IPR007818 GO:0003700|GO:0006355
Gso16g1069 317 Pfam Domain of unknown function (DUF702) 114 249 - -
Gso16g1069 317 MobiDBLite consensus disorder prediction 1 29 - -
Gso16g1069 317 MobiDBLite consensus disorder prediction 179 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1069 Gso-Chr16 29074065 29077186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1069 1 316 C2H2 Transcription Factor Family AT1G19790 41.504 6.53e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso16g1069 DUF702 9.4e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1069 - - gmx:100781981 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0440 2 4649014 4652340 Gso16g1069 16 29074065 29077186 GST