Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1052 ATGGTAATCCTCGAGGATTATCATTGTCAGGGCCCTAATCAGCCCAGTAACTTCACTCATGGAAAAGAATATCTTCAAGATAAGCAGTTGGAGTCAGACATCACATTTCATGTTGGAAAGCAAGAAGCTGAGCTTGCTTTGACGGTCAATAATGTAGTTTTCAATAGGGATCTGTATCAGCTAAAAGGTTTAATTCGCGCTAGAGCTGATCCCAACAAGACAGATTATGATGGACGGTCACCTTTGCATCTTGCAGCATCTAGAGGATATGAAGATATCACACTTTTCCTTATGCAAGAACATGTAGATGTCAATATTAAAGATAACTTCGGGAACACACCTTTACTTGAAGCAATTAAGAATGGACATGATCGGTTGTTTCGAGGTCTGGATTTAAGGTCCCAACACCTTGAGGACAAGGTGTTTTTGGATGGGCATAGGAATGTTATGAATCAGCCCAAGGTGGAGCAATTCAGCACAGAACAATCCAACACAGAAGAAGAAATAGCAGCAAACAAGGTGGAGACAGGCACTAACCTCAAGATCAAAATGAAAATATGCAGGCCGCACTACCTGAAGGATTTTGTGACCAATGCAATCCTAAATGCTGAGCTGGTTGCTTCTCATTGGGTGAAGGAGATTCCTCTGTCGGCTAGGATCTCTTCTCCATTGCCATTCTTTTATTTTCTTTCGTGCTCCTTAGGTCATGGAGAGGAAATAGAATAA 726 0.416 MVILEDYHCQGPNQPSNFTHGKEYLQDKQLESDITFHVGKQEAELALTVNNVVFNRDLYQLKGLIRARADPNKTDYDGRSPLHLAASRGYEDITLFLMQEHVDVNIKDNFGNTPLLEAIKNGHDRLFRGLDLRSQHLEDKVFLDGHRNVMNQPKVEQFSTEQSNTEEEIAANKVETGTNLKIKMKICRPHYLKDFVTNAILNAELVASHWVKEIPLSARISSPLPFFYFLSCSLGHGEEIE* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1052 241 PANTHER POTASSIUM CHANNEL AKT1 3 128 IPR045319 GO:0005249|GO:0006813
Gso16g1052 241 SUPERFAMILY Ankyrin repeat 55 128 IPR036770 -
Gso16g1052 241 Gene3D - 34 150 IPR036770 -
Gso16g1052 241 Pfam Ankyrin repeats (3 copies) 60 127 IPR002110 GO:0005515
Gso16g1052 241 PANTHER POTASSIUM CHANNEL SKOR 3 128 - -
Gso16g1052 241 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515
Gso16g1052 241 ProSiteProfiles Ankyrin repeat region circular profile. 77 109 - -
Gso16g1052 241 SMART ANK_2a 77 106 IPR002110 GO:0005515
Gso16g1052 241 SMART ANK_2a 110 139 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1052 Gso-Chr16 28629174 28630043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1052 3 124 Ion Channels AT5G37500 55.172 1.32e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1052 K21867 - gsj:114389934 492.656