Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1049 ATGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTGGGTTACTATCTGAGGAAGAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAGATCGACCTATATCGTATTGAACCATGGGATCTCCAAGAGACATACAGGATTGGGTACGAGGAGCAGAACGAGTGGTATTTCTTTAGCCACAAAGACAAGAAATATCCAACTGGGACAAGAACCAACAGAGCCACCATGGCAGGATTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTCATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTTGAGAATGGACCTCCACAGGAGGAAGGATGGGTGGTGTGCAGAGCATTCAAGAAAAGAACAACTAACGGCCAAACGAAGACTATTGAAGGATGGCATCGAAACTGCTTATACGATGAACAACAACAAGCATGTGGTAGTGTCAGCAGCACTGTGGTGGACCCTAATATTGACCTTATGTTAAGGCAACAACCTCAGAGGTTTTCAGGAGCTCAAAATTTCATGTACAAGCAAGAAGAGATCATAGAAGCAGATAATAATAATTTGAGCTTCATGCATGCAGAACAACAATTGGTGCAGCTTCCTCATCTAGAAAGTCCTTCTTTGCCACTAGCAAAGAAACAAAGCTCAGTAGTGTCCCCAATATCAGACAATATTAATAACAACGAAGATGATGATAATCCTCAAAAGGGTTTATCCAACACTACAAAGAAAGTGACCACTGATTGGAGAGCTCTTGACAAGTTCGTGGCTTCTCAGTTGAGCCAAGAAGAGAGGCATGAAATAGAAGGGGTGTCTAGCTTTGCAACTCATCACACTACTACTAGCTCGGACATGGCATTGCTGCTACTGCAGAATAATAGTAGGGAAAATGAAAGGAACAACAAGTTCAACCCGTTTTTCAATACAAGCTCAACAATATCAGACTGTGACATTGGGATATGCGTATTTGAAAAATGA 1089 0.4261 MMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQETYRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQEEGWVVCRAFKKRTTNGQTKTIEGWHRNCLYDEQQQACGSVSSTVVDPNIDLMLRQQPQRFSGAQNFMYKQEEIIEADNNNLSFMHAEQQLVQLPHLESPSLPLAKKQSSVVSPISDNINNNEDDDNPQKGLSNTTKKVTTDWRALDKFVASQLSQEERHEIEGVSSFATHHTTTSSDMALLLLQNNSRENERNNKFNPFFNTSSTISDCDIGICVFEK* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1049 362 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Gso16g1049 362 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 336 - -
Gso16g1049 362 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Gso16g1049 362 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 336 - -
Gso16g1049 362 MobiDBLite consensus disorder prediction 258 280 - -
Gso16g1049 362 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Gso16g1049 362 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1049 Gso-Chr16 28568179 28572154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1049 2 361 NAC Transcription Factor Family AT2G18060 59.580 8.48e-141 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso16g1049 NAM 8.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1049 - - gmx:100803726 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0426 2 4460912 4464707 Gso16g1049 16 28568179 28572154 GST
Gso11g0636 11 5689965 5694837 Gso16g1049 16 28568179 28572154 PCT
Gso16g1049 16 28568179 28572154 Gso11g0636 11 5689965 5694837 PCT