Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1048 ATGAGAACTCGAAATGCCGATTCCGCTTCCAAATCCGCAACCCCTAAGAAGACGCCGCCGCCGCCGAGGAAATCCCCTGCGGCAAAGCGCACCACCGCCACCAAAACCAGAGCCACAAAGAAGAACGAGGTTTCGCCCGCACCCGATTCCAACCCCTATCAATCTCCTCTGGAGCAGGAATCGTTAGGCAGTGCTAGCAGTGCAAAATTTGTGAAAAAGAAGACTCCGGGGAGACCGAGAAGTAAAGCAATTGATACTCCAAATTCGGAAGAGCAATGTGAGGCAGTAACTGATGAAACTCTGATTGAAGATGATACTGAGGTGGTAGAGAAAGTGGAAGATGTTGGAGTGGTTGGTGCAGGTAGTGTTGAGGGTGAGAAGGAGGGGGGACAAGGTGTTGGGTCTGTTGGATTATCTGACGAGACGGAAGGTAAGTCGATGGAAGTGGATGAACCTGTTGTTGAAAAGGTTTGCGAATTGGTGGAAAAGGGAAATGATGTAATGGAAGTTGAAGTAGCTGCTTCCCAGGATGCTTCTGTTTCTTTCAAGCGACTGGGGCGACCCATTGTGGATCTCAATATATCTGCGGATAATGAAGATTGTACTGGTGAAAAGGAGGGAGAAAAAGGAAAGGAAGAGTTGAAAGATCAAGAGTTGAAAGAACAGGAAGGAGAGAAAGGGAAGGAAGAGTTGAGAGAACTGGATGCAGAGAAAGGGAAGGAAGAGTTGAGAGAACTGGATGCAGAGAAAGCAAAGGAAGAGTTGAAAGAACTGGATGGAGAGAAAGGTAAGGAAGAATTGAAAGAACTGGATGGAGAGAAAGGTAAGGAAGAATTGAAAGAGCTGGATGGAGAGAAAGGTAAGGAAGAATTGAAAGAACTAGATGGAGAGAAAGGTAAGGAAGAGTTGACAGAACTGGAAGGACAGAAAGGTAAGGAAGAGTTAACAGAACTGGAAGGGCAGAAAGGTAAGGGAGAGTTGACAGAACTGGAGGGACAGAAAGGAAAGGTTGAGTTGAAAGAACAGGAAGGAGACAAAGGAAAGGAAAAGTTGAAAGTGCAGGAGCTGGAGAAAGCAAAGGGAGAGGAAACATACCTTTCTGGACATAAAGAGAACACCAAGTCTTTTGGTGTAGAAGTTAAAGCCCAGATGCAAAAAGAAGATGCTAATCCCATTAAAGATGATGGTGAAGGACTACAGAGTTGTGAAAAGTACGATCTTGGAGAACAAGGGAAGGTGGAACTTGTTGAAGAGGATCCTGAGGAACCTCCAGAAGAAACTTTGGCATTGGAGGAGGAACATAGGGAATTGGAGGCTATTGCAAATCAGCGAAAGATTAAAAAAGAACATGAAATTTTTGTTGGTGGATTGGATCGTGATGCTACAGAGGAGGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAGAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTCGTGAAGTTTGCTAATAAGGAGAATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTCATACATGGTAAGCGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACCAAAGAAGCTATTAAACAAAAGCTGAAGGATTATGGCATTGAAGGTGTTGAAAGCATTACACTTGTTCCAGATGTTCAGCATGAGGGCTTGAGCCGGGGCTTTGCATTCCTAGAGTTTTCTTGTCATGCTGACGCCATGCTTGCATTTAAGAGGCTACAAAAGCCTGATGTTATCTTTGGCCATGCTGAGCGAACAGCTAAGGTAGCCTTTGCTGAACCCATACATGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACATTGGGACGAGGATCATGTGAGGGAGCTGTTTAAAGCTTATGGTGAAATTGTAAGAATTGTGCTAGCACGGAATATGTCTTCAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGCGTAAATAAATCAGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCGCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGAGTGGTGGGTTCCGAATAAGTCATGCTAGGAGTGGAGCCTTTTCAAGACCAGGAAGGGGGTTTGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGGCAGGAGTTTCTATCGCGGTGGACACAGTCAAATTGGAAGAATGGGTTTTCGGGATGACCATGATTTTAGTATGCATCCGGATTTCCGTCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCGGGACCATCTAGACCTTATCATGATAGAGCATGGTACGGTATCCCTGATGGAGGCCCTAGTGAGCCTATTCCTCCAAGGAGGCCCTACTCCCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATTTTGATGATCCATATCTATACGATGACAATATGCAAGGAATGAAACGGCCATTTTATATGACTGACCCTGAGCCTGATTACATGGGGCCTACTAGACTACGTCCTCGATTGGATTATGCAGATCCACCTATATTTCCTGGAACTCATCACCATGATTCTTTTGGGGCTGGCAGCAGACAGTACCCGCCGGACTATTACGGTTCTGATTATGGTAGAGGTTCATATTCATCTTATTATGGGGGTGATGGCTCACATGGGCATGGATACTATTATTAA 2838 0.45 MRTRNADSASKSATPKKTPPPPRKSPAAKRTTATKTRATKKNEVSPAPDSNPYQSPLEQESLGSASSAKFVKKKTPGRPRSKAIDTPNSEEQCEAVTDETLIEDDTEVVEKVEDVGVVGAGSVEGEKEGGQGVGSVGLSDETEGKSMEVDEPVVEKVCELVEKGNDVMEVEVAASQDASVSFKRLGRPIVDLNISADNEDCTGEKEGEKGKEELKDQELKEQEGEKGKEELRELDAEKGKEELRELDAEKAKEELKELDGEKGKEELKELDGEKGKEELKELDGEKGKEELKELDGEKGKEELTELEGQKGKEELTELEGQKGKGELTELEGQKGKVELKEQEGDKGKEKLKVQELEKAKGEETYLSGHKENTKSFGVEVKAQMQKEDANPIKDDGEGLQSCEKYDLGEQGKVELVEEDPEEPPEETLALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKENAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVESITLVPDVQHEGLSRGFAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKVAFAEPIHEPDPEIMAQVKSVFINGLPPHWDEDHVRELFKAYGEIVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMSGGFRISHARSGAFSRPGRGFGRGRQPFNNRGNFNRGRSFYRGGHSQIGRMGFRDDHDFSMHPDFRQRQFGPQGAVRGGHYAGSRGAAFAGPSRPYHDRAWYGIPDGGPSEPIPPRRPYSPGGQFDMPFMGRHFDDPYLYDDNMQGMKRPFYMTDPEPDYMGPTRLRPRLDYADPPIFPGTHHHDSFGAGSRQYPPDYYGSDYGRGSYSSYYGGDGSHGHGYYY* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1048 945 MobiDBLite consensus disorder prediction 29 68 - -
Gso16g1048 945 MobiDBLite consensus disorder prediction 736 762 - -
Gso16g1048 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 452 520 IPR000504 GO:0003723
Gso16g1048 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 532 600 IPR000504 GO:0003723
Gso16g1048 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 630 696 IPR000504 GO:0003723
Gso16g1048 945 Coils Coil 339 359 - -
Gso16g1048 945 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 337 938 - -
Gso16g1048 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 450 528 IPR000504 GO:0003723
Gso16g1048 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 530 615 IPR000504 GO:0003723
Gso16g1048 945 Gene3D - 529 614 IPR012677 -
Gso16g1048 945 MobiDBLite consensus disorder prediction 96 110 - -
Gso16g1048 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 628 708 IPR000504 GO:0003723
Gso16g1048 945 CDD RRM_SF 630 704 - -
Gso16g1048 945 MobiDBLite consensus disorder prediction 1 151 - -
Gso16g1048 945 Gene3D - 399 524 IPR012677 -
Gso16g1048 945 CDD RRM_SF 532 595 - -
Gso16g1048 945 CDD RRM_SF 452 520 - -
Gso16g1048 945 SMART rrm1_1 629 704 IPR000504 GO:0003723
Gso16g1048 945 SMART rrm1_1 531 608 IPR000504 GO:0003723
Gso16g1048 945 SMART rrm1_1 451 524 IPR000504 GO:0003723
Gso16g1048 945 Gene3D - 616 771 IPR012677 -
Gso16g1048 945 SUPERFAMILY RNA-binding domain, RBD 619 733 IPR035979 GO:0003676
Gso16g1048 945 SUPERFAMILY RNA-binding domain, RBD 451 595 IPR035979 GO:0003676
Gso16g1048 945 PANTHER NUCLEOLIN-LIKE ISOFORM X1 337 938 - -
Gso16g1048 945 Coils Coil 236 268 - -
Gso16g1048 945 MobiDBLite consensus disorder prediction 198 353 - -
Gso16g1048 945 MobiDBLite consensus disorder prediction 195 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1048 Gso-Chr16 28534384 28541813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1048 452 696 Eukaryotic Initiation Factors Gene Family AT1G22760 25.581 6.02e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1048 - - gmx:100819035 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0425 2 4445081 4451999 Gso16g1048 16 28534384 28541813 GST