Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1043 ATGCAGGCCAAATTTGATATCCCAAAAGCACCAAATGCAAAGAAAAAGGTCATGTCAATTGTGACCACTAGATGGAGGCAATTTAAATCTTCCTTCACCACCAAGTTTGTCTGTGCTAACTCTGAGGGGCAACATAAACATGATCCTTTGGTAAAATATGGTCTAGATCCACAAACTTGGGAGGAATTTGCTGCAACCCATAAAACCCTTAACTGGCAGGTTCTTGTTTCTGCTCAAGACCAAATTATGTGCATTCAGACTGAGAGGGAAGCACTCCTCCAATTCAAGGCTGCACTTGTGGATGACTATGGCATGCTCTCTTCTTGGACCACTTCTGATTGCTGCCAATGGCAAGGGATTCGCTGCAGCAACCTCACCGGCCATGTCCTAATGCTCGACCTTCATAGAGATGTTAATGAAGAACAAGTACGTTATATTAGCGGAGAGATCCACAAGTCGTTGATGGAGTTGCAACAATTAAACTATTTAAACCTCAGTTGCAATTCTTTTCAACGCAAAGGAATCCCAGAGTTTCTTGGTTCTCTCAGCAACTTGAGATACCTTGATCTGTCATATTCTCAATTTGGCGGAAAAATTCCCACTCAGTTTGGCTCTCTTTCTCATTTGAAATACTTAAATCTTGCTGGGAATTCTCTGAAGGGTTCAATCCCACGTCAACTTGGAAATCTCTCCCAGTTGCAGCATCTTGATCTCTGGGGCAATCAACTTGAAGGAAATATACTCTCTCAAATTGGAAATCTCTCCCAGTTGCAGCATCTTGATCTCAGTGTCAATCGATTTGAAGGAAATATACCCTCTCAAATTGGAAATCCCTCCCAGTTGCAGCATCTTGATCTCAGCTACAATTCTTTTGAAGGAAGTATACCGTCCCAACTTGGGAACCTTTCAAATTTGCAGAAGCTTTATCTTGGAGGATCACATTATGATGATGATGGTGGTGCTCTCAAAATTGACGATGGAGATCATTGGTTGTCTAATCTCATTTCTTTAACCCATCTTTCCTTGCTCTCCATATCTAATCTCAACACTTCTCATAGCTACCCCCAAATGATTGCCAAGCTACCAAAACTTAGAGAACTGAGTTTAATTGATTGTAGCCTTTCCGATCAGTTTATCCTTTCAGTGAGGCTCTCTAAATTCAATTTTTCTAGTTCCCTTTCCATTCTTGATCTTTCCTCGAACAACTTCACGTCATCAATGATTCTCCAGTGGCTGTCCAACGTCACTTTCAACCTTGTTGAGCTTGACCTTAGTTATAACCTCTTGGAGGGTTCCACATTAAACCATTTTGGCCGTGTAATGAATTCTCTTGAGCACCTCGACCTCTCATATAATATATTCAAGGGTGAGGATTTGAAATCCTTGGCGAATATATGCACCTTACATTCTTTATACATGCCAGCAAACAATTTGACTGAAGACCTTCCATCAATCCTTCATAATTTGTCTAGTGGTTGTGTTAGACACTCATTACAAGATTTGGATTTGACATATAACCAAATCACCGGCTCTTTACCTGACATTTCAGTATTCTCATCTCTAAAAACATTGGCTCTTGATATGAATCAATTAAGTGGAAATATACCTGAAGGCCTCCGCTTACCACTTCATTTGAAATCTCTGTCAATCCAATCAAACTCTTTAGAAGGTGGAATTCCCAAATCATTAGGGAATGCATGTGCTTTGCGCTCATTGGACATGTCTGATAATAGCTTGAGTGAAGAGTTTCCAATGATAATCCATCACTTGTCTGGATGTGCCAGATTCTCGCTGCAAGAATTGAACTTAGAAGGAAATCAAATCAATGGTACGTTTCCTGACCTTTCAGTATTTTCTGCCTTGAAAAGATTGGATCTTTCAGAAAATCAATTAAACGGAAAAATTCCAGAGAGGAACAAATTGCCGTCTCTGTTGGAGTCTTTGTCAATCGAATCAAACTCTTTAGAAGGTGGAATTCCCAAATCATTTGGGAATGCATGTGCTTTGCGCTCATTGTATATGTCTAATAATAGCTTGAGTGAAGAGTTTCCAATGATAATCCATCACTTATCTGGATGTGCTAGATATTCATTGGAACAATTATATCTAGGCATGAATCAAATCAACGGCACACTACCCGACCTCTCAATATTCTCATCTTTAAGAGAATTATATCTTTATGGAAACAAGCTAAAAGGAGAGATTTCTAAAGATATTAAATTTCCACCTCAACTGAAGAGACTAGATATGCAATCAAATTCCTTAAAGGGTGTGCTCACTGACTATCATTTCGCTAATATGTCTAACTTAGACTTATTGGAGTTATCTGACAACTCTTTATTGGCCTTGGCATTTAGCCAAAATTGGGTCCCACCATTTCAGTTGAGCCACATAGGATTGCGATCTTGCAAGCTAGGTCCAGTATTTCCCAAATGGTTGGAGACACAAAATCAAATTTGGGATATTGACATTTCAAATGCTGGAATAGCAGGGATAATTCCCTCAAAAATCGGAAAGCTAACATCACTTGAATCTCTTGATTTGTCAAGAAACCAATTGGTTGGTTCAATTGCTCCAAGTCTTACTCAAATTTATGGACTCGGTGTGTTAGATTTGTCACATAACTATCTAACTGGAAAAATTCCAACCAGCACGCAGTTACAGAGTTTTAATGCCTCGAGTTATGAAGATAATCTTGATCTTTGTGGACCGCCTCTTGAGAAATTGTGTATTGATAAGGGGCTAGCACAAGAACCAAATGTTGAAGTCCCAGAGGATGAATATTCACTTTTCAGTCGTGAATTTTACATGAGTATGACATTTGGATTTGTTATAAGCTTTTGGGTGGTGTTTGGCTCAATCTTATTCAAGCGTTCTTGGAGACATGCCTATTTCAAGAAGCGTGCAGAGAGTGATACTTCTGTTCCTGATGCTGCAACTAAAGCTGAAAAATTTGCTCAACGTGTCATCAGATACACTTCTGTGCCGGAGGAAGGAACAATAGATGGAATGAGAGTGGATGAGGTGGGAGAGAAGGGTTGA 3042 0.3958 MQAKFDIPKAPNAKKKVMSIVTTRWRQFKSSFTTKFVCANSEGQHKHDPLVKYGLDPQTWEEFAATHKTLNWQVLVSAQDQIMCIQTEREALLQFKAALVDDYGMLSSWTTSDCCQWQGIRCSNLTGHVLMLDLHRDVNEEQVRYISGEIHKSLMELQQLNYLNLSCNSFQRKGIPEFLGSLSNLRYLDLSYSQFGGKIPTQFGSLSHLKYLNLAGNSLKGSIPRQLGNLSQLQHLDLWGNQLEGNILSQIGNLSQLQHLDLSVNRFEGNIPSQIGNPSQLQHLDLSYNSFEGSIPSQLGNLSNLQKLYLGGSHYDDDGGALKIDDGDHWLSNLISLTHLSLLSISNLNTSHSYPQMIAKLPKLRELSLIDCSLSDQFILSVRLSKFNFSSSLSILDLSSNNFTSSMILQWLSNVTFNLVELDLSYNLLEGSTLNHFGRVMNSLEHLDLSYNIFKGEDLKSLANICTLHSLYMPANNLTEDLPSILHNLSSGCVRHSLQDLDLTYNQITGSLPDISVFSSLKTLALDMNQLSGNIPEGLRLPLHLKSLSIQSNSLEGGIPKSLGNACALRSLDMSDNSLSEEFPMIIHHLSGCARFSLQELNLEGNQINGTFPDLSVFSALKRLDLSENQLNGKIPERNKLPSLLESLSIESNSLEGGIPKSFGNACALRSLYMSNNSLSEEFPMIIHHLSGCARYSLEQLYLGMNQINGTLPDLSIFSSLRELYLYGNKLKGEISKDIKFPPQLKRLDMQSNSLKGVLTDYHFANMSNLDLLELSDNSLLALAFSQNWVPPFQLSHIGLRSCKLGPVFPKWLETQNQIWDIDISNAGIAGIIPSKIGKLTSLESLDLSRNQLVGSIAPSLTQIYGLGVLDLSHNYLTGKIPTSTQLQSFNASSYEDNLDLCGPPLEKLCIDKGLAQEPNVEVPEDEYSLFSREFYMSMTFGFVISFWVVFGSILFKRSWRHAYFKKRAESDTSVPDAATKAEKFAQRVIRYTSVPEEGTIDGMRVDEVGEKG* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1043 1013 Pfam Leucine rich repeat 183 243 IPR001611 GO:0005515
Gso16g1043 1013 Pfam Leucine rich repeat 256 312 IPR001611 GO:0005515
Gso16g1043 1013 SUPERFAMILY L domain-like 743 905 - -
Gso16g1043 1013 PANTHER BNAC08G45300D PROTEIN 388 486 - -
Gso16g1043 1013 PANTHER BNAC08G45300D PROTEIN 719 836 - -
Gso16g1043 1013 PANTHER BNAC08G45300D PROTEIN 831 966 - -
Gso16g1043 1013 PANTHER BNAC08G45300D PROTEIN 213 297 - -
Gso16g1043 1013 PANTHER BNAC08G45300D PROTEIN 279 380 - -
Gso16g1043 1013 PANTHER BNAC08G45300D PROTEIN 75 214 - -
Gso16g1043 1013 PANTHER BNAC08G45300D PROTEIN 649 724 - -
Gso16g1043 1013 PANTHER BNAC08G45300D PROTEIN 494 637 - -
Gso16g1043 1013 Pfam Leucine rich repeat N-terminal domain 87 123 IPR013210 -
Gso16g1043 1013 ProSiteProfiles Leucine-rich repeat profile. 497 519 IPR001611 GO:0005515
Gso16g1043 1013 Gene3D Ribonuclease Inhibitor 595 916 IPR032675 -
Gso16g1043 1013 SUPERFAMILY RNI-like 444 780 - -
Gso16g1043 1013 Pfam Leucine Rich Repeat 645 665 IPR001611 GO:0005515
Gso16g1043 1013 SMART LRR_typ_2 840 864 IPR003591 -
Gso16g1043 1013 SMART LRR_typ_2 157 182 IPR003591 -
Gso16g1043 1013 SMART LRR_typ_2 618 648 IPR003591 -
Gso16g1043 1013 SMART LRR_typ_2 206 230 IPR003591 -
Gso16g1043 1013 SMART LRR_typ_2 254 278 IPR003591 -
Gso16g1043 1013 SMART LRR_typ_2 518 542 IPR003591 -
Gso16g1043 1013 SMART LRR_typ_2 767 787 IPR003591 -
Gso16g1043 1013 SMART LRR_typ_2 279 302 IPR003591 -
Gso16g1043 1013 Pfam Leucine Rich repeat 496 510 IPR001611 GO:0005515
Gso16g1043 1013 Pfam Leucine Rich repeat 442 463 IPR001611 GO:0005515
Gso16g1043 1013 Gene3D Ribonuclease Inhibitor 542 594 IPR032675 -
Gso16g1043 1013 PRINTS Leucine-rich repeat signature 621 634 - -
Gso16g1043 1013 PRINTS Leucine-rich repeat signature 840 853 - -
Gso16g1043 1013 PANTHER OS10G0469600 PROTEIN 649 724 - -
Gso16g1043 1013 PANTHER OS10G0469600 PROTEIN 494 637 - -
Gso16g1043 1013 PANTHER OS10G0469600 PROTEIN 831 966 - -
Gso16g1043 1013 PANTHER OS10G0469600 PROTEIN 388 486 - -
Gso16g1043 1013 PANTHER OS10G0469600 PROTEIN 75 214 - -
Gso16g1043 1013 PANTHER OS10G0469600 PROTEIN 279 380 - -
Gso16g1043 1013 PANTHER OS10G0469600 PROTEIN 719 836 - -
Gso16g1043 1013 PANTHER OS10G0469600 PROTEIN 213 297 - -
Gso16g1043 1013 SUPERFAMILY RNI-like 147 487 - -
Gso16g1043 1013 Gene3D Ribonuclease Inhibitor 82 320 IPR032675 -
Gso16g1043 1013 Gene3D Ribonuclease Inhibitor 321 541 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1043 Gso-Chr16 28413911 28437401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1043 71 960 Receptor kinase-like Gene Family AT3G11080 31.379 2.06e-83 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1043 - - gmx:102670330 1454.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1043 16 28413911 28437401 Gso9g1292 9 36498575 36504345 GST