Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1035 ATGGGAACCTGCTTTTCCGCCACCAAAGTCAGCGGCTCCCACGGCAACGCCGTCACCGTCAACAAGAACCGCAAGGGGGCCGCGAAGCCGAAATCAGAGACGGCAACGGCGAATCCCCTACGGCACAAGGCAAGTTCGCGCCACGTGCCGTGCGGGAAGCGCACCGATTTCGGTTACGAGAAGGATTTCGATCAGCGTTACTCGCTCGGAAAATTGCTCGGGCACGGCCAATTTGGTTACACTTACGTTGGAATCGACAAAGCCAATGGCGATCGCGTCGCCGTTAAGAGGCTTGAGAAGAGTAAGATGGTTCTGCCTATTGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCACTTACTGGCCATGAGAATGTGGTTCAGTTCTATAATGCTTTTGAAGATGGTTCTTATGTGTACATAGTTATGGAGTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGACATGAAACCAGAGAATTTTCTTTTTAAATCAACCAAAGAAGATTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGTTAAAACGTAAGTCTGGTCCTCAATCAGATGTGTGGAGTATTGGTGTTATTACATACATATTGTTGTGCGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTAATGCTGCAAAAGATTTTGTGAAAAAATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGATCAATTTGATGCTATAGATGTAGACAAAAATGGTTCGATTAGCCTGGAAGAGATGAGACAGATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTACATTACACGTGCATCAATTGGAGGAAGACTCTGACAAGTGGCAGCAACTGTCACAGGCTGCTTTTGAGAAATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTGACAAAGATGGAAAAATAAGCCTACCAGAGTTTCGGAGACTTCTTAGAACTGCAAGCATGGGTTCTCAAAATGTTTCAAGCCCATCTGTTCATCGGCGGCAGAGGTTCTAG 1524 0.4495 MGTCFSATKVSGSHGNAVTVNKNRKGAAKPKSETATANPLRHKASSRHVPCGKRTDFGYEKDFDQRYSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKSKMVLPIAVEDVKREVKILKALTGHENVVQFYNAFEDGSYVYIVMELCEGGELLDRILAKKDSRYTERDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRKKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEALEIPIDISVLSNMRQFVKYSRFKQFALRALASTLNEEELADIKDQFDAIDVDKNGSISLEEMRQIDNNTDGLVDFREFVAATLHVHQLEEDSDKWQQLSQAAFEKFDLDKDGYITPEELRMHTCLRGSVDPLLEEADIDKDGKISLPEFRRLLRTASMGSQNVSSPSVHRRQRF* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1035 507 Gene3D - 334 490 - -
Gso16g1035 507 Gene3D Transferase(Phosphotransferase) domain 1 153 333 - -
Gso16g1035 507 SUPERFAMILY EF-hand 359 489 IPR011992 -
Gso16g1035 507 Pfam EF-hand domain pair 434 486 IPR002048 GO:0005509
Gso16g1035 507 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 21 496 - -
Gso16g1035 507 SMART efh_1 431 457 IPR002048 GO:0005509
Gso16g1035 507 SMART efh_1 374 402 IPR002048 GO:0005509
Gso16g1035 507 SMART efh_1 461 489 IPR002048 GO:0005509
Gso16g1035 507 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Gso16g1035 507 ProSiteProfiles EF-hand calcium-binding domain profile. 465 492 IPR002048 GO:0005509
Gso16g1035 507 MobiDBLite consensus disorder prediction 24 47 - -
Gso16g1035 507 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Gso16g1035 507 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Gso16g1035 507 SUPERFAMILY Protein kinase-like (PK-like) 65 342 IPR011009 -
Gso16g1035 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Gso16g1035 507 Pfam Protein kinase domain 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1035 507 CDD EFh 433 487 IPR002048 GO:0005509
Gso16g1035 507 ProSiteProfiles Protein kinase domain profile. 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1035 507 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Gso16g1035 507 Pfam EF hand 375 397 IPR002048 GO:0005509
Gso16g1035 507 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Gso16g1035 507 CDD STKc_CAMK 66 326 - -
Gso16g1035 507 Gene3D Phosphorylase Kinase; domain 1 60 152 - -
Gso16g1035 507 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Gso16g1035 507 SMART serkin_6 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1035 507 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1035 Gso-Chr16 28217436 28231806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1035 1 499 EF-hand Containing Proteins AT2G17890 71.936 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso16g1035 Pkinase 7.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1035 K13412 - gmx:100798941 1005.74