Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1028 ATGGCTACGGGATCACCTTCCTCTTCCTCTTCCTCCAATTTCGATGTGTTCCTCAGCTTCAGAGGGGAAGACACACGTCATGGTTTTACTGGCCATCTCTACAACACTCTTCAGAGCAAGGGAATCCACACTTTCATTGATGATGAAGAGCTTAAAAGAGGGGAGGAAATAACACCAGCACTTATGAAGGCAATTCCAGATTCCAGAGTTGCCATCACTGTGCTCTCTGAACACTATGCTTCTTCCTCGTTTTGTTTAGATGAACTTGCAACCATCCTTGACCAGAGGAAACGGTTGTTGGTTATACCGGTCTTTTATAAGGTAGATCCTTCTGATGTGAGAAACCAGAGAGGTAGTTATGGAGAAGCATTGGCAAAGCTTGAGAGAAGGTTCCAGCATGACCCGGAGAAGTTGCAAAAATGGAAGATGGCTCTGAAGCAAGTAGCTGACTTGTCTGGCTATCATTTCAAAGAGGGAGATGGATATGAATTCAAGTTTATTGAGAAGATTGTTGAGCAGGTCTCAGGGGTGATTAGTCTTCGTCCTTTACATGTTGCGGATTATCCAGTTGGACTAGAGTCACGAGTGCTACATGTAAGGAGCCTTTTGGATGCTGGATCTGATGATGGTGTCCACATGATAGGGATTCATGGAATGGGTGGGATAGGAAAATCAACACTTGCTCGAGCTGTCTATAATGAATTGATAATTGCTGAGAAGTTTGATAGTTTGTGTTTTCTTGCAAATGTGAGGGAAAACTCAAACAAACACGGGTTAGAACACCTCCAAGGAAAGCTTCTTTTAGAAATACTCGGAGATAAGAACATCAACTTAACAAGTAAGCAACAAGGAATTTCAATCATACAGTCTAGGCTCACAGGAAAGAAAGTTCTCTTGATTCTAGATGATGTTGACACACGCGAGCAATTACAAGCAATTGCTGGAAGACCTGGTTGGTTTGGTCCCGGCAGCAAAATCATCATCACAACTCGGGACCAACAATTGCTTAGATCTCATGAAGTTAATAAAATATATGAGGTGAAGGAATTGGATGAGAACGACGCTCTACAGCTGCTTACATGGGAAGCTTTTAAAAAAGAAAAAGCTTATCCAACTTACGAGGAGGTCTTGCATCGTGTAGTAACTTATGCTTCTGGTCTTCCATTGGCGTTGGAAGTAATAGGTTCCCACTTGGTTGGAAAAAGTATACAAGAATGGGAATCTGCAATCAAACAATATAAAAGAATTCCCAAGAAGGAAATTCTTGATATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAGAAAGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATGGAGATTGACAGAGGTCGAACGTATACTTCGTGGTGATTATGATGACTCCATGGAACATCATATTGGGGTGTTGATTAAAAAATCTCTAATAAATGTTAGTGGTTGGGATGATGTAGTTACCATGCATGACTTGATTCAGGACATGGGCAGGCGAATAGACCAACAAGAATCCTCAAAAGAGCCAGGGAAGGGAAGGAGATTGTGGTTAACAAAAGATATAATTGAAGTTTTAGAAGACAACTTGGGAAGTAGTGAGATTGAAATCATATGTCTGGATTTCTCCTTATCCGAGAAAGAAGCAACAATAGAATGGGAAGGAGATGCCTTCAAAAAGATGAAAAACCTTAAAATACTTATTATTAGAAATGGTAAATTTTCCCAAGGTCCCAATTATTTTCCAGAAAGTTTAAGAGTACTCGAATGGCACCGGTATCCTTCTAATTGTTTACCATCTAATTTTCCTCCGAAGGAACTTGCCATATGCAAGTTACCTCAAAGTTGCATTACGTCATTTGGGTTCCATGGCTCAAGGAAGAAGTTCTGGAATCTAAAGGTTTTGAATTTTGAAGAGTGTGAATTTTTAACAGAGATACCTGACGTATCTGATCTCCCAAATTTGGAAGAACTTTCATTTGATCGGTGTGGGAATTTAATTACAGTTCACCACTCAATTGGTTTTCTAAGTAAACTTAAAATATTGAGTGCTAAAAGTTGCAGCAAGCTTACCACATTTCCACCTCTCAACTTGACCTCGCTTGAAACACTTCAACTTTCATATTGTTCCAGTCTTGAGAATTTTCCAGAAATATTAGGAGAGATGAAAAACTTATTGATGCTTGAATTGCTTGACCTTGGCTTAAAAGAATTGCCAGTTTCATTTCAAAATCTTGTTGGACTCGAAACTTTATCCCTGAGACATTGTGGAATTCTTTTGTTACCAATTAACATTGTCATGATGCCTAAACTGGCTTCATTGGACGCTGAAAGTTGCAAGGGGTGGCAATGGGTAAAATCAGAAGAGGGTGAAGAAAAAGTGGGCTCAATAGTATGTTCAAATGTATATCACTTCAGTGTCGATGGTTGCAACCTGTATGATGATTTTTTTTCAACAGGTTTCATGCAGCTTGATCATGTGAAAATTTTAATCCTAAGGAAGAATAATTTCACATTCCTTCCTGAATGCATCAAAGAATTGCAATTTTTAAGAAGTCTTGATGTGAGTGGTTGCTTGCATCTTCAGGAAATTAGGGGGGTTCCACCAAATTTAAAAGAATTCACGGCAAGAGAATGTATATCCTTGTCTTCCTCGAGTTTAAGCATGTTGTCAAATCAGGAATTGCATGAGGCTGGACAAACTGTGTTTCTGTTTCCAGGAGCAACTATTCCAGAGTGGTTCAATCACCAAAGCAGGGGACCTTCAAGTTCTTTCTGGTTTCGTAATGAATTCCCTGACAATGTTCTTTGTCTTCTTCTAGCACGAGTGGAATGCCTACATCTAGATGTTATTCCCAGGCTCAAGATGTTCATCAATGGCAAACGTCATAAAATTACCTCTCGGTGGGGGGGCAGTGAAGTAAGAAAGGCAAAATTGAATTATACATATCTATTTGACCTAAAATCAGCTTTTGAGCTTGATGATCTATCTGAAGTGGCTTTAGAAAAGGAATGGAACCATGTGGAAATTACATACGCAGGTCTGATAGAGACCTCACTGTTTAAAGCAACCGGAATCCATGTATTGAGACAGGATGATATTCGATATGATGATCCCTATGGCAAGAGAAAATTAGAGCATGATCTCAACAGTTTTGAATCACAACCACTAATTAAAAAGCCTAGGTTGTTTTGCAGGTTATCGAGGTGGGTTGGCCCTGAAAGAATTATAAATCTTCTGGGGAATGCTGCAGATGGAACTTTAATTACTAATGCCCAGAGGAGATATAGGCAGATTCCTATGGACTCCTTTTGTCGGCGATGCGACTTTTTGGAGGACACATGTCTGCATGCTCTTCGTGATTGTCCAAAGGTGGCTGCATTTTGGAGAAGTGTGTTACCTAAGAAATTAGCACCAAAGTTTTTTAATGGTGATGTGACAGTGTGGCTGGAAACAAATTTATCTTTTTCAGAGGCAGCTTTTTTTTGGCCAACTTTTTTTGGGATTGCAGTGGAACTGTTGTGGGAATACCGCAACGACCTTAAGTTCTTTCAACATGTCTTTGGGCATGGGGCCTATTCAATAGATCCTAGTAAAACCATAGATATTGTCTTTAAGCGTTATAAAGATTATATGAGAGCCCATGCTTCTCCCAATTTGATGACGAGGAATCTCTTGAAGTGGAAGCCCGAAAATTTTAAGGATTGGTTGTTGAGGCTAAATGTGAGTGGTGCCTATGATCCCTCTTCAGGTACCGCTGCATGCGGAGGTATATTCAGTGGCAACCGTCGTAGATTCGTGCTTGGGTTTTCGGTTAAGCTTGGGGAATGTTTGTCAATTGATGAGGCTGAAATTTGGGGTATTTATCATGGTATGAAAATTGCAAGGAAGTATGATATTTGGGGTTTATATCGTGATATTCTAAGGCAGCATAACATTCCAATAAGTCTTGAGATTGCAAGGCAGCATGATTTTGGTAAAATTTTTGTGGAATCGGGCTCTGAGATAGCTATTGAGTTTGTGTTAGATGGATGCCCTACATCTACATCTACATCTACAAGGCAGCATTGTTTCCCACTCTGTCAAGAGTTGAAAGCTCTAACCTCTGCTACAAATCATTCATACTTGTTTTACACACAGCACAATGCTGCTGCTGATTCCTTTGCCAAATTCGGTTTATCCATGAAGCAGCAGGCCGCGTCAATTTTTTCTGCTTGTCCCTCCTTTTGCCAATCTTTTATTCCAAAATACAGATAA 4260 0.3984 MATGSPSSSSSSNFDVFLSFRGEDTRHGFTGHLYNTLQSKGIHTFIDDEELKRGEEITPALMKAIPDSRVAITVLSEHYASSSFCLDELATILDQRKRLLVIPVFYKVDPSDVRNQRGSYGEALAKLERRFQHDPEKLQKWKMALKQVADLSGYHFKEGDGYEFKFIEKIVEQVSGVISLRPLHVADYPVGLESRVLHVRSLLDAGSDDGVHMIGIHGMGGIGKSTLARAVYNELIIAEKFDSLCFLANVRENSNKHGLEHLQGKLLLEILGDKNINLTSKQQGISIIQSRLTGKKVLLILDDVDTREQLQAIAGRPGWFGPGSKIIITTRDQQLLRSHEVNKIYEVKELDENDALQLLTWEAFKKEKAYPTYEEVLHRVVTYASGLPLALEVIGSHLVGKSIQEWESAIKQYKRIPKKEILDILKVSFDALEEEEKKVFLDIACCFKGWRLTEVERILRGDYDDSMEHHIGVLIKKSLINVSGWDDVVTMHDLIQDMGRRIDQQESSKEPGKGRRLWLTKDIIEVLEDNLGSSEIEIICLDFSLSEKEATIEWEGDAFKKMKNLKILIIRNGKFSQGPNYFPESLRVLEWHRYPSNCLPSNFPPKELAICKLPQSCITSFGFHGSRKKFWNLKVLNFEECEFLTEIPDVSDLPNLEELSFDRCGNLITVHHSIGFLSKLKILSAKSCSKLTTFPPLNLTSLETLQLSYCSSLENFPEILGEMKNLLMLELLDLGLKELPVSFQNLVGLETLSLRHCGILLLPINIVMMPKLASLDAESCKGWQWVKSEEGEEKVGSIVCSNVYHFSVDGCNLYDDFFSTGFMQLDHVKILILRKNNFTFLPECIKELQFLRSLDVSGCLHLQEIRGVPPNLKEFTARECISLSSSSLSMLSNQELHEAGQTVFLFPGATIPEWFNHQSRGPSSSFWFRNEFPDNVLCLLLARVECLHLDVIPRLKMFINGKRHKITSRWGGSEVRKAKLNYTYLFDLKSAFELDDLSEVALEKEWNHVEITYAGLIETSLFKATGIHVLRQDDIRYDDPYGKRKLEHDLNSFESQPLIKKPRLFCRLSRWVGPERIINLLGNAADGTLITNAQRRYRQIPMDSFCRRCDFLEDTCLHALRDCPKVAAFWRSVLPKKLAPKFFNGDVTVWLETNLSFSEAAFFWPTFFGIAVELLWEYRNDLKFFQHVFGHGAYSIDPSKTIDIVFKRYKDYMRAHASPNLMTRNLLKWKPENFKDWLLRLNVSGAYDPSSGTAACGGIFSGNRRRFVLGFSVKLGECLSIDEAEIWGIYHGMKIARKYDIWGLYRDILRQHNIPISLEIARQHDFGKIFVESGSEIAIEFVLDGCPTSTSTSTRQHCFPLCQELKALTSATNHSYLFYTQHNAAADSFAKFGLSMKQQAASIFSACPSFCQSFIPKYR* 1420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1028 1419 PRINTS Disease resistance protein signature 213 228 - -
Gso16g1028 1419 PRINTS Disease resistance protein signature 291 305 - -
Gso16g1028 1419 PRINTS Disease resistance protein signature 384 398 - -
Gso16g1028 1419 PRINTS Disease resistance protein signature 697 713 - -
Gso16g1028 1419 Gene3D - 349 433 IPR042197 -
Gso16g1028 1419 SUPERFAMILY L domain-like 554 896 - -
Gso16g1028 1419 Pfam NB-ARC domain 198 415 IPR002182 GO:0043531
Gso16g1028 1419 SUPERFAMILY "Winged helix" DNA-binding domain 419 528 IPR036390 -
Gso16g1028 1419 Gene3D - 7 183 IPR035897 -
Gso16g1028 1419 ProSiteProfiles TIR domain profile. 12 178 IPR000157 GO:0007165
Gso16g1028 1419 Gene3D Ribonuclease Inhibitor 530 714 IPR032675 -
Gso16g1028 1419 Gene3D Ribonuclease Inhibitor 715 902 IPR032675 -
Gso16g1028 1419 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 918 IPR044974 GO:0006952
Gso16g1028 1419 CDD RNase_H_like 1241 1391 IPR044730 -
Gso16g1028 1419 Gene3D - 184 345 IPR027417 -
Gso16g1028 1419 Pfam TIR domain 13 174 IPR000157 GO:0007165
Gso16g1028 1419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 443 IPR027417 -
Gso16g1028 1419 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
Gso16g1028 1419 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 16 918 - -
Gso16g1028 1419 Pfam Reverse transcriptase-like 1242 1302 IPR002156 GO:0003676|GO:0004523
Gso16g1028 1419 SMART till_3 13 151 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1028 Gso-Chr16 28131754 28136922 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1028 6 780 WRKY Transcription Factor Family AT4G12020 31.539 1.38e-80 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1028 - - gmx:121173722 2397.47