Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1026 ATGGCTTTGGGATCATGTTCCTCTTCCTTCAACTATGATGTTTTCCTCAGCTTCAGAGGCGCAGACACACGTCATGGTTTTACTGGAAATCTTTACAAAGCTCTTGATGACAAGGGAATCTACACTTTCATTGATGATGAGGAACTTCAGAGTGGAGAGGAAATAACACCAGCACTTCTGAAGGCAATTCAAGAGTCCAGGATTGCCATCACTGTGCTCTCTATAAATTATGCTTCTTCCTGGTTTTGCTTAGATGAACTTGCTCACATTCTTGAGTGCTTTAAGAGCAAAAATCTGTTGGTTGTGCCAGTTTTTTATAAGGTGGATCCTTCTGATGTCAGACACCAGAAAGGTAGTTATGGAGAAGCATTGGCTAAGCATCAGGAAAGGTTCAACCACAACATGGAGAAGTTGGAGTATTGGAAGAAGGCTCTGCATCAAGTAGCTAACTTGTCTGGCTTTCATTTCAAACACGGAGAAGGGTATGAATACGAGTTTATTGGGAGGATTGTTGAGTTGGTCTCCGGCAAGATTAATCATGCTCCTTTGCCCGTTGCAGATTACCTGGTTGGACTAGAGTCAAGATTACTAGAAGTAACAAAGCTTTTGGATGTTGAATCTGATGATGGTGTCTACATGATAGGGATCCATGGAATTGGCGGGATAGGAAAATCAACACTTGCTATAGCCGTTTATAATTTGATTGCTTGCCATTTTGATGGTTCATGTTTTCTTATAGATTTGAGAGAAAAATCAAACAAACAGGGGTTACAACACCTCCAGAGCATCCTTCTTTGGGAAATACTTGGAGAGAAGGAAATCAACCTAGCAAGTGTTGAACAAGGAGCTTCAATTATACAACATAGGCTTCAGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGCATGAACAATTACAGGCTATTGTTGGAAGACCTTGTCGGTTTGGTCCAGGCAGTAGAGTCATCATCACCACTCGGGACAAACAACTGCTAGCATCTCATGGGGTTAAAAGAACATATGAAGTGAAACTATTGAATGAGAACAATGCTCTTCAATTGCTTACTTGGAAGTCTTTTAAAACAGAAAAGGTTGATCCAAGTTATAAGGAGGTCTTGAATGATGTAGTAATTTATGCTTCTGGCCTTCCATTAGCCTTGGAAGTGATAGGTTCCAACTTGTTTGGGAAAAGCATAGAAGAATGGAAATCTGCTATCAAACAATATAAAAGAATTCCTAGCATTCAAATCCTAGAGATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAACAAAAGAATGTTTTCCTTGACATTGCCTGTTGCTTCAATAGATATGCTTTGACAGAGGTTGTAGATATACTTCGCGCTCATTATGGTGATTGCATGAAATATCATATTGGAGTGTTGGTTGAAAAATCTCTTATAAAAAAGTTTAGTTGGTATGGTAGATTACCTAGAGTTACAATGCATGACTTGATTCAGGACATGGGTAAAGAAATTGTCAGGCAAGAATCACGGAAAGAGCCAGAGAAGCGCAGTAGACTGTGGTTACTGGAAGATATAATTCAAGTTTTGGAAGACAACAAGGGAACTAGTCAAATTGAAATCATATGTCTAGACTTCCCCAGCTTTGGCAAAGAAGAAATAGTAGAATTAAATACAAAGGCTTTCAAGAAGATGAAAAACCTCAAAACGCTTATTATTAGAAATGGTAAATTTTCCAAAGGTCCCAAGTATCTTCCAAATAATTTGAGAGTACTGGAATGGTGGAGATATCCTTCACATTGTTTACCATCTGATTTTCATCTGAAAAAACTTGCCATATGCAAGTTACCCTATAGTTCTATTTCGTCATTTGAGTTGGATGGCTTATGGAAGGTGCCAAGTAGCATTGTCCTGATGCCGGAATTGACTGAAAGCTTCGTTGTGGGATTGAAAGGGTGGCAATGGCTAAAACAGGAAAAGGGTGAAGAAAAAACGGGGTCAACAGTATCTTCAGAGGTAGAAAGGCTTACTGTCTCAAGTTGCAACCTCTGTGATGAATTTTTTTCAATAGATTTTACTTGGTTTGCACATATGAAGAAATTATGTCTATCCGAGAATAATTTCACAATCCTTCCTGAATGCATCAAAGAATGTCAATTTTTAAGGATACTTGATGTATGCCACTGCAAGCATCTTCGGGAAATTAGAGGGATTCCACCAAACTTAAAGCATTTCTTTGCAATAAACTGTAAATCATTGACTTCCTCAAGTATAAGCAAGTTCCTAAATCAGGAACTGCATGAAGCTGGAAACACTGTTTTGTTTGCCAGGAGATAG 2331 0.3865 MALGSCSSSFNYDVFLSFRGADTRHGFTGNLYKALDDKGIYTFIDDEELQSGEEITPALLKAIQESRIAITVLSINYASSWFCLDELAHILECFKSKNLLVVPVFYKVDPSDVRHQKGSYGEALAKHQERFNHNMEKLEYWKKALHQVANLSGFHFKHGEGYEYEFIGRIVELVSGKINHAPLPVADYLVGLESRLLEVTKLLDVESDDGVYMIGIHGIGGIGKSTLAIAVYNLIACHFDGSCFLIDLREKSNKQGLQHLQSILLWEILGEKEINLASVEQGASIIQHRLQRKKVLLILDDVDKHEQLQAIVGRPCRFGPGSRVIITTRDKQLLASHGVKRTYEVKLLNENNALQLLTWKSFKTEKVDPSYKEVLNDVVIYASGLPLALEVIGSNLFGKSIEEWKSAIKQYKRIPSIQILEILKVSFDALEEEQKNVFLDIACCFNRYALTEVVDILRAHYGDCMKYHIGVLVEKSLIKKFSWYGRLPRVTMHDLIQDMGKEIVRQESRKEPEKRSRLWLLEDIIQVLEDNKGTSQIEIICLDFPSFGKEEIVELNTKAFKKMKNLKTLIIRNGKFSKGPKYLPNNLRVLEWWRYPSHCLPSDFHLKKLAICKLPYSSISSFELDGLWKVPSSIVLMPELTESFVVGLKGWQWLKQEKGEEKTGSTVSSEVERLTVSSCNLCDEFFSIDFTWFAHMKKLCLSENNFTILPECIKECQFLRILDVCHCKHLREIRGIPPNLKHFFAINCKSLTSSSISKFLNQELHEAGNTVLFARR* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1026 776 SMART till_3 11 151 IPR000157 GO:0007165
Gso16g1026 776 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
Gso16g1026 776 Gene3D Ribonuclease Inhibitor 521 653 IPR032675 -
Gso16g1026 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 441 IPR027417 -
Gso16g1026 776 SUPERFAMILY L domain-like 484 757 - -
Gso16g1026 776 Gene3D - 182 345 IPR027417 -
Gso16g1026 776 PRINTS Disease resistance protein signature 213 228 - -
Gso16g1026 776 PRINTS Disease resistance protein signature 289 303 - -
Gso16g1026 776 PRINTS Disease resistance protein signature 382 396 - -
Gso16g1026 776 PRINTS Disease resistance protein signature 714 730 - -
Gso16g1026 776 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 629 772 IPR044974 GO:0006952
Gso16g1026 776 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 615 IPR044974 GO:0006952
Gso16g1026 776 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Gso16g1026 776 Pfam TIR domain 11 175 IPR000157 GO:0007165
Gso16g1026 776 Gene3D - 347 431 IPR042197 -
Gso16g1026 776 SUPERFAMILY "Winged helix" DNA-binding domain 418 529 IPR036390 -
Gso16g1026 776 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 629 772 - -
Gso16g1026 776 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 615 - -
Gso16g1026 776 Gene3D Ribonuclease Inhibitor 654 767 IPR032675 -
Gso16g1026 776 Pfam NB-ARC domain 198 412 IPR002182 GO:0043531
Gso16g1026 776 SMART AAA_5 210 353 IPR003593 -
Gso16g1026 776 Gene3D - 5 181 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1026 Gso-Chr16 28089705 28094446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1026 7 744 WRKY Transcription Factor Family AT4G12020 28.515 7.88e-63 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1026 - - gsj:114389246 1551.95