Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1025 ATGGCTTTGGGATCATGTTCCTCTTCCTTCAACTATGATGTTTTCCTCAGCTTCAGAGGTGCAGACACACGTCATGGTTTTACTGGAAATCTTTACAATGCTCTTGATGACAGGGGAATCTACACTTTCATTGATGATGAGGAGCTTCAGAGTGGAGAGGAAATAACACCAGCACTTCTGAAGGCAATTCAAGAGTCCAGGATTGCCATCACTGTGCTCTCTATAAATTATGCTTCTTCCTCATTTTGCTTAGATGAACTTGCTCACATTCTTGAGTGCTTTAAGAGCAAAACTCTGTTGGTTGTGCCAGTTTTTTATAAGGTGGATCCTTCCGATGTCAGACACCAGAAAGGTAGTTATGGAGAAACATTGGCTCAACTACAGAAAAGGTTCAACCACAACATGGAGAAGTTGGAGTATTGGAAGAAGGCTCTGCATCAAGTAGCTAACTTGTCTGGCTTTCATTTCAAACACGGAGAAGGGTATGAATACGAGTTTATTGGGAGGATTGTTGAGTTGGTCTCCAGCAAGATTAATCATGCTCCTTTGCCTGTTGCGGATTACCCGGTTGGACTAGAGTCAAGATTACTAGAAGTAACAAAGCTTTTGGATGTTGAATCTGATGATGGTGTCTACATGATAGGGATCCATGGAATTGGCGGGATAGGAAAAACAACACTTGCTATAGCCGTTTATAATTTGATTGCTTGTCATTTTGATGGTTCATGTTTTCTTAAAGATTTGAGAGAAAAATCAAACAAACAGGAGTTACAATACCTCCAGATCATCCTTCTTTGGGAAATACTTGGAGAGAAGGAAATCAACCTAGCACGTGTTGAACAAGGAACTTCAATTATACAACATAGGCTTCAGCGGAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGCATGAACAATTACAGGCTATTGTTGGAAGACCTTGTTGGTTTGGTCCAGGCAGTAGAGTCATCATCACCACTCGGGACAAACAACTGCTAGCATCTCATGGGGTTAAAAGAACATATGAAGTGAAACTATTGAATGAGAACAATGCTCTTCAATTGCTTACATGGAAATCTTTTAAAACAGAAAAGGTTGATCCAAGTTATAAGGAGGACTTGAATGATGTAGTAATTTATGCTTCTGGCCTTCCATTAGCCTTGGAAGTGATAGGTTCCAACTTGTTTGGGAAAAGTATAGATGAATGGAAATCTGCTATCAAAAAATATAAAAGAATTCCTAGCATTCAAATCCTAGAGATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAAAACAAAAGAATGTTTTCCTTGACATTGCCTGTTGCTTCAATAGATATGCTTTGACAGAGGTTATAGATATACTTCGCGCTCATTATGGTGATTGCATGAAATATCATATTGGAGTGTTGGTTGCAAAATCTCTTATAAAAAAGTTTAGTTGGTATGGTAGATTACCTAGAGTTACAATGCATGACTTGATTGAGGACATGGGTAAAGAAATTGTCAGGCAAGTATCACCGAAAGAGCCAGAGAAGCGCAGTAGACTGTGGTTACTGGAAGATATAATTCAAGTTTTGGAAGACAACAAGGGAACTAGTCAAATTGAAATCATATGTCTAGACTTCCCCAGCTTTGGCAAAGAAGAAATAGTAGAATTAAATACAAAGGCTTTCAAGAAGAAGAAAAACCTCAAAACAGTTATTATTAAAAATGGTAAATTTTCCAAAGGTCCCAAATATCTTCCAAATAATTTGAGAGTACTGGAATGGTGGAGATATCCTTCACATTGTTTACCATCTGATTTTCATCCGAAAAAACTTTCCATATGCAAGTTACCCTATAGTTGTATTTCCTCATTTGACTTGGATGGCTTATGGAAGGTAAGCTTAAAGAGTACATTTTCCACATCTTGTTATTTAATAAATTCACTTTTAAGATTATTCATTCTGTTCTTATTGTTTCTGTTTTTTTTTTTGCAGATGTTTGTAAATCTAACAATATTGAATTTTGACAGGTGCAAATGTTTAACACAGATTCCTGACGTATCTGGTCACCCAAACTTGGAGGAATTTTCATTTGAATGCTGCCATAATTTAATTACGGTTCACACTTCAATTGGTTTTCTGGATAAGCTTAAAATATTGAATGCTTTTAGATGCAAAAGGCTAAGAAGTTTTCCACCTATCAAGTTGACTTCTCTTGAAAAACTTAACCTTTCATTTTGTTACGGTCTTGAGAGTTTTCTAAAAATATTAGGAAAGATGGAAAACATAAGAGAACTTTGTTTGTCACACTCTTCCATAACAGAATTGCCATTTTCATTTCAAAATCATGCTGGGCTTCAAGGATTAGACCTGAGCTTTTTAAGTCCTCATGCAATTTTTAAGGTGCCAAGTGGCATTGTCCTGATGCCAGATGAAATCTTCGCCGTGGGATTGAAAGGGTGGCAATGGCTAAAACAGGAAGAGGGTGAAAAAACAACGGGGTCAACAGTATCTTCAAAGGTAGAAAGGCTTACTGTCTCAAGTTGCAACCTCTGTGATGAATTTTTTTCAATAGATTTTACTTGGTTTGCACATATGAAGAAATTATGTCTATCCGAGAATAATTTCACAATCCTTCCAGAATGCATCAAAGAATGTCAATTTTTAAGGATACTTGATGTATGTTACTGCAAGCATCTTCGGGAAATTAGAGGGATTCCACCAAACTTAAAGCATTTCTTTGCAATAAACTGTAAATCATTGACTTCCTCAAGTATAAGCAAGTTCCTAAATCAGGAACTGCATGAAGCTGGAAACACTGTGTTTTGTTTGCCAAGAGATAGGATTCCTGAGTGGTTCGATCAGCAAAGCAGGGGACCTTCAATTTCTTTCTGGTTTCGTAATAAGTTCCCTGACATGGTTCTTTGTCTTATTGTTGCACCTATTCAAGACAAATTTTTTCGTCCCATGGTGTTCATCAATGGCAACCAATGTTCCCCTTATAGTTGCCATTTCAGGACAGGAATGCACCATGCATATCTTTGTGATCTACAAGAGATAAAATCCAGAAATAGTCCATATGAGATGCCTTTCGAAAATGGATGGAACCATGTGAATGTTACATGTCCACGTTGTATAGATACCTATATCCACCCTGTTAAAATGGGAATCCATATATTTAAACAGGAATATGCCATGGAGGATGTTCGATTTACTGATCCTTTTATAGCAAGAGAAAATCAGACGATGATCTAG 3246 0.3715 MALGSCSSSFNYDVFLSFRGADTRHGFTGNLYNALDDRGIYTFIDDEELQSGEEITPALLKAIQESRIAITVLSINYASSSFCLDELAHILECFKSKTLLVVPVFYKVDPSDVRHQKGSYGETLAQLQKRFNHNMEKLEYWKKALHQVANLSGFHFKHGEGYEYEFIGRIVELVSSKINHAPLPVADYPVGLESRLLEVTKLLDVESDDGVYMIGIHGIGGIGKTTLAIAVYNLIACHFDGSCFLKDLREKSNKQELQYLQIILLWEILGEKEINLARVEQGTSIIQHRLQRKKVLLILDDVDKHEQLQAIVGRPCWFGPGSRVIITTRDKQLLASHGVKRTYEVKLLNENNALQLLTWKSFKTEKVDPSYKEDLNDVVIYASGLPLALEVIGSNLFGKSIDEWKSAIKKYKRIPSIQILEILKVSFDALEEKQKNVFLDIACCFNRYALTEVIDILRAHYGDCMKYHIGVLVAKSLIKKFSWYGRLPRVTMHDLIEDMGKEIVRQVSPKEPEKRSRLWLLEDIIQVLEDNKGTSQIEIICLDFPSFGKEEIVELNTKAFKKKKNLKTVIIKNGKFSKGPKYLPNNLRVLEWWRYPSHCLPSDFHPKKLSICKLPYSCISSFDLDGLWKVSLKSTFSTSCYLINSLLRLFILFLLFLFFFLQMFVNLTILNFDRCKCLTQIPDVSGHPNLEEFSFECCHNLITVHTSIGFLDKLKILNAFRCKRLRSFPPIKLTSLEKLNLSFCYGLESFLKILGKMENIRELCLSHSSITELPFSFQNHAGLQGLDLSFLSPHAIFKVPSGIVLMPDEIFAVGLKGWQWLKQEEGEKTTGSTVSSKVERLTVSSCNLCDEFFSIDFTWFAHMKKLCLSENNFTILPECIKECQFLRILDVCYCKHLREIRGIPPNLKHFFAINCKSLTSSSISKFLNQELHEAGNTVFCLPRDRIPEWFDQQSRGPSISFWFRNKFPDMVLCLIVAPIQDKFFRPMVFINGNQCSPYSCHFRTGMHHAYLCDLQEIKSRNSPYEMPFENGWNHVNVTCPRCIDTYIHPVKMGIHIFKQEYAMEDVRFTDPFIARENQTMI* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1025 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 441 IPR027417 -
Gso16g1025 1081 Gene3D - 347 431 IPR042197 -
Gso16g1025 1081 SUPERFAMILY L domain-like 487 933 - -
Gso16g1025 1081 PRINTS Disease resistance protein signature 213 228 - -
Gso16g1025 1081 PRINTS Disease resistance protein signature 289 303 - -
Gso16g1025 1081 PRINTS Disease resistance protein signature 382 396 - -
Gso16g1025 1081 PRINTS Disease resistance protein signature 731 747 - -
Gso16g1025 1081 Gene3D - 176 341 IPR027417 -
Gso16g1025 1081 Pfam TIR domain 11 180 IPR000157 GO:0007165
Gso16g1025 1081 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
Gso16g1025 1081 Pfam NB-ARC domain 198 412 IPR002182 GO:0043531
Gso16g1025 1081 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 953 IPR044974 GO:0006952
Gso16g1025 1081 Gene3D - 9 175 IPR035897 -
Gso16g1025 1081 SMART till_3 11 151 IPR000157 GO:0007165
Gso16g1025 1081 Gene3D Ribonuclease Inhibitor 495 801 IPR032675 -
Gso16g1025 1081 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Gso16g1025 1081 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 953 - -
Gso16g1025 1081 SMART AAA_5 210 353 IPR003593 -
Gso16g1025 1081 Gene3D Ribonuclease Inhibitor 818 952 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1025 Gso-Chr16 28040371 28047073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1025 7 788 WRKY Transcription Factor Family AT4G12020 31.047 1.45e-73 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1025 - - gmx:100812810 1927.52