Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1022 ATGTTCGATACTGAGTGTAAACTACACTTATCAGTTTCATACTTATTCAAGTTTGATTTAATTTGGAGACCCAACAAGCAGCCATCCACATTCATACTAAGATTTCTTATCATGGCTACGGGATCATGTTCCTCTTCCTCTTCCTCCAATTACGATGTGTTCCTCAGCTTCAGAGGGGAAGACACACGTCATGGTTTTACTGGCTATCTCTACAAAGCTCTTCATGACAAGGGAATCCGCACTTTCATTGATGAGGAGCTTCAAAGAGGGAAGGAAATAACACCAGAACTTATGAAGGCAATTGAAGATTCCAGAGTTGCCATCACTGTGCTCTCTGAAGACTATGCTTCTTCCTCGTTTTGCTTAGATGAACTTGCAACCATCTTTGACCAGAGGAAACGGTTGTTGGTTATACCGGTCTTTTATAAGGTGGATCCTTCTGATGTGAGAAACCAGAGAGGCAGTTATGGAGAAGCATTGAAAAAGCTTGAGGGAAAGTTCCAGCATGACCCGGAGAAGTTGCAAAAATGGAAGATGGCTCTGAAGCAAGTAGCTGACTTGTCTGGCTATCATTTCAAAGAGGGAGATGGATATGAATTCAAGTTTATTGAGAAGATTGTTGAGCAGGTCTCTCGGGTGATTAGTCTTGGTCTTTTACATGTTGCGGATTACCCAGTTGGACTAGAGTCACGAGTGCTACATGTAAGGAGCCTTTTGGATGCTGGATCTGATGATGGTGTCCACATGATAGGGATTCATGGAATGGGCGGGATAGGAAAATCAACACTTGCTCGAGCTGTCTATAATGTATTGATAATTGCTGAGAAGTTTGATGGTTTGTGTTTTCTTGCAAATGTGAGGGAAAACTCAAACAAACACGGGTTAGAACGCCTCCAAGAAAAGCTTCTTTTAGAAATACTCGGAGAGAAGAACATCAGCTTAACAAGTAAGGAACAAGGAATTCCAATCATGGAGTCTAGGCTCACGGGAAAGAAGATTCTCTTGATTCTAGATGATGTTGACAAACGCGAGCAATTACAAGCAATTGCTGGAAGACCTGGTTGGTTTGGTCCCGGCAGCAAAATCATCATCACAACTCGGGACAAACAATTGCTAACATCTCATGAAGTTTATATAACATATGAGGTGAAGGAATTGGATGAGAAGGATGCTCTACAGCTGCTTAAATGGGAAGCTTTTAAAAAGGAAAAAGCTTCTCCAACTTACGTGGAGGTGGAGGTCTTGCATCGTGTAGTAACTTATGCTTCTGGTCTTCCATTGGCGTTGGAAGTAATAGGTTCCCACTTGGCTGGACAAAATATACAAGAATGGGAATCCACAATCAAACTATTTAAAAGAAGTCCCAAGAAGGAAATTCTAGATATACTTCGAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGCAGAAACTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATGGAGATTGACAGAGGTCGAACATATACTTCGTGATGATTATGAAGACCGCATGAAACGTCATATTGGGGTGTTGGTTAAAAAATCTCTAATAAAGGTTAGTGGGTGGGATGATGTAGTTACCATTCATGACATGATTCAGGAGGACATGGGCTGGGATGGTGTAGTTACCATGCATGACTTGATTCAGGACATGGGCAGGCGAATAGACCAACAAGAATCCTCAAAAGAGCCAGGGAAGCGAAGGAGATTGTGGTTAACAAAAGATATAATTGAAGTTTTAGAAGACAACTCGGGAAGTAGAGAGATTGAAATCATATGTCAGGATTTATGCTTATCCGAGAAAGAAGCAGCAATAGAATGGGAAGGAGATGCCTTCAAAAAGATGAAACACCTTAAAATACTTATTATTAGAAATTTACAATTTTCCAAAGGTCCCAATTGTTTTCCAGAAGGTTTAAGATTACTGGAATGGCACGGGTATCCTTCTAATTGTTTACCATCTAATTTTCCTCCGAAGGAACTTGTCATATGCAAGTTACCTCAAAGTTGCATTACGTCATTTGGGTTCCATGGCTCAATGAAGAAGTTCTCGAATCTAAAGGTTTTGAAGTTTAAAAAGTGTGAATTTTTAACAGAGATACATGACGTATCTGATCTCCCAAATTTGGAAGAACTTTCATTTCGTGTGTGTGGGAATTTAATTACAGTTCACCACTCAATTGGTTTTCTAAATAAACTTAAAATATTGAATGCTACAGGTTGCAGGAAGCTTACCACATTTCCACCTCTCAACTTGACCTCGCTTAAAAGACTTCACCTTTCATCTTGTTCCAGTCTTGAGAATTTTCCAGAAATATTAGGAGAGATGAAAAACTTGACCTCGCTTAAATTGTTTGACCTTGGCTTAAAAGAATTGCCAGTTTCATTTCAAAATCTTGTTGGACTCAAAACTTTATCCCTGGGTGATTGTGGAATTCTTTTGTTACCAAGTAACATTGTCATGATGCCTAAACTGGATATTTTGAGGGCTAAAAGTTGCGAGGGGTTGCAATGGGTAAAATCAGAAGAGCGTGAAGAAAAAGTGGGCTCAATAGTATGTTCAAATGTATATCACTTCAGTGTCAATGGTTGCAACCTGTATGATGATTTTTTTTCAACAGGTTTCGTGCAGCTTGATCATGTGAAAACTTTAAGCCTAAGGGACAATAATTTCACATTCCTTCCTGAATGCATCAAAGAATTTCAATTTTTAAGAAGTCTTGATGTGAGTGGTTGCTTGCATCTTCAGGAAATTAGGGGGCTTCCACCAAACTTAAAAGAATTCAAGGCAAGAGAATGTATATCCTTGTCTTCCTCGAGTTTAAGCATGTTGTCAAATCAGGAATTGCATGAGGCTGGACAAACTGAGTTTCTGTTTCCAGGAGCAACTATTCCAGAGTGGTTCAATCACCATAGCAGGGGACCTTCAAGTTCTTTCTGGTTTCGTAATGAATTCCCTGACAATGTTCTTTGTCTTCTTCTAGCACGTGTGGAATACACATATCAATGTATTTCCAAGCTCACGGTGTTCATCAATGGCAAACGTCATAAAATTATCCCTCGGGGGCCGGGCAGTCAAGGAACAAAGGAGAAATTGAATTATACATATCTATTTGACTTTAAATCATATTTTGAGCTTGATGATCTATCTGAAGTGGCTTTAGAAAAGGAATGGAATCATGTGGAAATTACATACGCAGGTCTGATAGAGAACTCACTGGTTAAAGCAACCGGAATCCATGTATTCAGACAGGATGATATTCGATATGATGATCCCTATGGCAAGAGAAAATTAGAGCATGATCTCAACAGTTTTGAATCACAACCACTAATTAAAAACCCTAGAAGGTTGTTTTGCAGGTTATCGAGGTGGGTTGGCCCTGAAAGAATTATAAATCTTCTGGGGAATGCTGCAGATGGAGCTTTAATTACTAATGCCCAGAGGAGATACAGGCATATTTCTATGGACTCCTTTTGTCCGCGATGCCGCCTTGTGGAGGAGACATGTCTGCATGCTCTTCGTGATTGTCGAAAGGTGGCTGCATTTTGGAGAAGTGTGTTACCTAAGAAATTAGCACCAAAGTTTTTTAAAGGTGATGTGACAGTGTGGCTGGAAACAAATTTATCTTTTTCAGAGGCAGCTTTTTTTTGGCCAACTTTTTTTGGGATTGCAGTGGAACTGTTGTGGGAATACCGCAACGACCTTAAGTTCTTTCAACGTGCCTTTCGGCATGGGGTTTATTCAATAGATCCTAGTAAAAGCATGGATATTGTCTTTAAGCGTTATAAAGATTATATGAGAGCCCATGCTTCTCACAATTTGATGACGAGGAATCTCTTGAAGTGGAATCAGAGCCCATGGTTGTTGAGGCTAAATGTGAGTGGTGCCTATGATCCCTCTTCAGGTACTGCTGCATGCGGAGGTATATTCAGAGACAAAGATGATGATAGATTCGTGCTTGGGTTTTCGGTTAAGCTTGAGGAATGTTGGTCAATTGATGAGGCTGAAATATGGGGTATTTATCATGGTATGAAGATTGCAAGGAAGTATGATATTTGGGGTTTATATCGTGATATTCTAAGGCAGAATAACATTCGAATAAGTCTTGGGATTGCAAGGCAGCATGATTTTGGTAAAATTAGAGTGGAATCGGGCTCTAAGAAAGCTATTGAGTTTGTGTTAGATGGATGCCCTACAGCTACATCTACAAGGCAGCATTGTTTCCCACTCTCTCAAGAGTTGAAAGCTCTAACCTCTGCTACAAATCATTCATACTTCTTTTACACAGGGCACAATGGTGCTGCTGATTCCTTTGCCAAATTCGGTTTATCCATGAGACAGCAGGCCGCGTCAATTTTTTCTGCATGTCCCTCCTTTTGCCAAAATTTTATTTTAAAAGAGAGATACATGTTACATGTTACGTAA 4428 0.3993 MFDTECKLHLSVSYLFKFDLIWRPNKQPSTFILRFLIMATGSCSSSSSSNYDVFLSFRGEDTRHGFTGYLYKALHDKGIRTFIDEELQRGKEITPELMKAIEDSRVAITVLSEDYASSSFCLDELATIFDQRKRLLVIPVFYKVDPSDVRNQRGSYGEALKKLEGKFQHDPEKLQKWKMALKQVADLSGYHFKEGDGYEFKFIEKIVEQVSRVISLGLLHVADYPVGLESRVLHVRSLLDAGSDDGVHMIGIHGMGGIGKSTLARAVYNVLIIAEKFDGLCFLANVRENSNKHGLERLQEKLLLEILGEKNISLTSKEQGIPIMESRLTGKKILLILDDVDKREQLQAIAGRPGWFGPGSKIIITTRDKQLLTSHEVYITYEVKELDEKDALQLLKWEAFKKEKASPTYVEVEVLHRVVTYASGLPLALEVIGSHLAGQNIQEWESTIKLFKRSPKKEILDILRVSFDALEEEEQKLFLDIACCFKGWRLTEVEHILRDDYEDRMKRHIGVLVKKSLIKVSGWDDVVTIHDMIQEDMGWDGVVTMHDLIQDMGRRIDQQESSKEPGKRRRLWLTKDIIEVLEDNSGSREIEIICQDLCLSEKEAAIEWEGDAFKKMKHLKILIIRNLQFSKGPNCFPEGLRLLEWHGYPSNCLPSNFPPKELVICKLPQSCITSFGFHGSMKKFSNLKVLKFKKCEFLTEIHDVSDLPNLEELSFRVCGNLITVHHSIGFLNKLKILNATGCRKLTTFPPLNLTSLKRLHLSSCSSLENFPEILGEMKNLTSLKLFDLGLKELPVSFQNLVGLKTLSLGDCGILLLPSNIVMMPKLDILRAKSCEGLQWVKSEEREEKVGSIVCSNVYHFSVNGCNLYDDFFSTGFVQLDHVKTLSLRDNNFTFLPECIKEFQFLRSLDVSGCLHLQEIRGLPPNLKEFKARECISLSSSSLSMLSNQELHEAGQTEFLFPGATIPEWFNHHSRGPSSSFWFRNEFPDNVLCLLLARVEYTYQCISKLTVFINGKRHKIIPRGPGSQGTKEKLNYTYLFDFKSYFELDDLSEVALEKEWNHVEITYAGLIENSLVKATGIHVFRQDDIRYDDPYGKRKLEHDLNSFESQPLIKNPRRLFCRLSRWVGPERIINLLGNAADGALITNAQRRYRHISMDSFCPRCRLVEETCLHALRDCRKVAAFWRSVLPKKLAPKFFKGDVTVWLETNLSFSEAAFFWPTFFGIAVELLWEYRNDLKFFQRAFRHGVYSIDPSKSMDIVFKRYKDYMRAHASHNLMTRNLLKWNQSPWLLRLNVSGAYDPSSGTAACGGIFRDKDDDRFVLGFSVKLEECWSIDEAEIWGIYHGMKIARKYDIWGLYRDILRQNNIRISLGIARQHDFGKIRVESGSKKAIEFVLDGCPTATSTRQHCFPLSQELKALTSATNHSYFFYTGHNGAADSFAKFGLSMRQQAASIFSACPSFCQNFILKERYMLHVT* 1476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1022 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 481 IPR027417 -
Gso16g1022 1475 Pfam TIR domain 50 211 IPR000157 GO:0007165
Gso16g1022 1475 Gene3D Ribonuclease Inhibitor 592 768 IPR032675 -
Gso16g1022 1475 CDD RNase_H_like 1292 1349 IPR044730 -
Gso16g1022 1475 ProSiteProfiles TIR domain profile. 49 214 IPR000157 GO:0007165
Gso16g1022 1475 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 53 971 IPR044974 GO:0006952
Gso16g1022 1475 Gene3D - 44 217 IPR035897 -
Gso16g1022 1475 SMART till_3 50 187 IPR000157 GO:0007165
Gso16g1022 1475 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 53 971 - -
Gso16g1022 1475 Gene3D Ribonuclease Inhibitor 769 958 IPR032675 -
Gso16g1022 1475 SUPERFAMILY Ribonuclease H-like 1292 1446 IPR012337 -
Gso16g1022 1475 SUPERFAMILY L domain-like 606 950 - -
Gso16g1022 1475 Pfam NB-ARC domain 234 457 IPR002182 GO:0043531
Gso16g1022 1475 Gene3D - 218 379 IPR027417 -
Gso16g1022 1475 SUPERFAMILY Toll/Interleukin receptor TIR domain 44 190 IPR035897 -
Gso16g1022 1475 Gene3D - 385 471 IPR042197 -
Gso16g1022 1475 PRINTS Disease resistance protein signature 249 264 - -
Gso16g1022 1475 PRINTS Disease resistance protein signature 327 341 - -
Gso16g1022 1475 PRINTS Disease resistance protein signature 422 436 - -
Gso16g1022 1475 PRINTS Disease resistance protein signature 751 767 - -
Gso16g1022 1475 Pfam Reverse transcriptase-like 1293 1354 IPR002156 GO:0003676|GO:0004523
Gso16g1022 1475 SUPERFAMILY "Winged helix" DNA-binding domain 457 582 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1022 Gso-Chr16 28028277 28033621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1022 46 848 WRKY Transcription Factor Family AT4G12020 29.262 3.26e-68 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1022 - - gsj:114389244 2962.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1022 16 28028277 28033621 Gso8g0484 8 4463903 4472185 PCT