Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1019 ATGTTCACAGCACCTTTTCCTACATCCACTGTTACTCTCTCCGGTAAAAGCGTAACCTCACCGCCGCGCCACGTCAGATTCCGGTCAGTAATATCGTTCGCCACCGCCACTTTCACGGAGGAGCAACAACATAAGGCAGCTCCGTATCTGAGACCTCATCACGGGATGGCTTCGAGCGCGACGCTGTACGACATTCTGGGGATCCGCGCCACGGCGTCCGGCGAGGAAATCAGGGCGGCGTACCGGCGGCTGGCGAGGGTGTGCCACCCTGACGTGGCGCCGGTGGAGCGAAAGGAATCCTCTGCGGGCGAGTTCATGAAGATCCATGCTGCGTACTGCACGCTCTCGGATCCCGAGAAGCGCGACAGCTACGATAGAAGCTTGTTCCGGCGCCAGCAGCGACCGGTCAAGACGACGTTGTCGGGGGCTTCCGGCTACGGTGGGCGGAACTGGGAAACGGATCAGTGTTGGTAG 474 0.6055 MFTAPFPTSTVTLSGKSVTSPPRHVRFRSVISFATATFTEEQQHKAAPYLRPHHGMASSATLYDILGIRATASGEEIRAAYRRLARVCHPDVAPVERKESSAGEFMKIHAAYCTLSDPEKRDSYDRSLFRRQQRPVKTTLSGASGYGGRNWETDQCW* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1019 157 SMART dnaj_3 60 120 IPR001623 -
Gso16g1019 157 CDD DnaJ 61 117 IPR001623 -
Gso16g1019 157 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 157 - -
Gso16g1019 157 Pfam DnaJ domain 62 125 IPR001623 -
Gso16g1019 157 PANTHER DNAJ PROTEIN HOMOLOG-LIKE 1 157 - -
Gso16g1019 157 PRINTS DnaJ domain signature 63 81 IPR001623 -
Gso16g1019 157 PRINTS DnaJ domain signature 81 96 IPR001623 -
Gso16g1019 157 PRINTS DnaJ domain signature 100 120 IPR001623 -
Gso16g1019 157 SUPERFAMILY Chaperone J-domain 56 131 IPR036869 -
Gso16g1019 157 Gene3D DnaJ domain 52 142 IPR036869 -
Gso16g1019 157 ProSiteProfiles dnaJ domain profile. 61 128 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1019 Gso-Chr16 28001618 28002494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1019 63 125 C2H2 Transcription Factor Family AT1G74250 43.284 3.17e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1019 - - gmx:100795760 317.005