Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1014 ATGGCGGAAGAGCGATTCACGGGCGTGGTGCAGTGGTTTAACAATGGCAAGGGCTTCGGCTTCATCAAGCCCGACGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCAGATCCGACGGCTACCGCACCCTCCTCGAGGGCGACCGCGTTGAGTTCGCCATCGCCACCGGAGACAACGACAAGACCAAGGCCGTCGACGTCACTGGCGTCGACGGCGCCCCTCTCCAGCCCCGCGCCTCTGCCGCCAACAACCGCGCCGGAGGATCCGGCTTCGGCGCCAGGCGCAATGGTGGCAGCGGCGCCGCGTGCTACCAGTGTGGTGATTTCGGCCACCTCGCAAGGGATTGCAACAGGAGCAGCAATACCGGCGGCGGTGGAGGCGGCAGTGGCGGTGGTTGTTTCAATTGCGGCGGGTTCGGCCACCTCGCGAGGGATTGCGTGCGCGGCGGAGGCGGCAATGTGGGTGTAGGCGGCGGTGGCGGGAGCGGATCTTGCTTTAGGTGTGGCGGATTTGGACACATGGCGAGGGATTGTGCCACCGGGAAGGGTAACATTGGCGGTGGGAGCAGCGGTGGCGGTTGTTTTCGGTGTGGGGAGGTTGGTCATTTGGCTAGGGATTGCGGCATGGAAGGAGGGAGATATGGCGATGGTGGTAACAGTGGTGGCGGCGGCGGTGGAAAAAGCACGTGCTTTAACTGTGGGAAGCCAGGGCATTTTGCAAGGGAATGTGTTGAAGCTTCAGGGTGA 753 0.6335 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGVDGAPLQPRASAANNRAGGSGFGARRNGGSGAACYQCGDFGHLARDCNRSSNTGGGGGGSGGGCFNCGGFGHLARDCVRGGGGNVGVGGGGGSGSCFRCGGFGHMARDCATGKGNIGGGSSGGGCFRCGEVGHLARDCGMEGGRYGDGGNSGGGGGGKSTCFNCGKPGHFARECVEASG* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1014 250 ProSiteProfiles Zinc finger CCHC-type profile. 105 118 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 SUPERFAMILY Retrovirus zinc finger-like domains 216 246 IPR036875 GO:0003676|GO:0008270
Gso16g1014 250 Gene3D - 84 128 - -
Gso16g1014 250 Gene3D - 222 250 - -
Gso16g1014 250 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Gso16g1014 250 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 94 - -
Gso16g1014 250 PANTHER COLD SHOCK DOMAIN PROTEIN 2 89 131 - -
Gso16g1014 250 PANTHER COLD SHOCK DOMAIN PROTEIN 2 121 249 - -
Gso16g1014 250 PRINTS Eggshell protein signature 89 100 - -
Gso16g1014 250 PRINTS Eggshell protein signature 151 166 - -
Gso16g1014 250 PRINTS Eggshell protein signature 182 192 - -
Gso16g1014 250 PRINTS Eggshell protein signature 223 241 - -
Gso16g1014 250 SUPERFAMILY Retrovirus zinc finger-like domains 157 211 IPR036875 GO:0003676|GO:0008270
Gso16g1014 250 Gene3D - 129 187 - -
Gso16g1014 250 ProSiteProfiles Zinc finger CCHC-type profile. 135 148 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 ProSiteProfiles Zinc finger CCHC-type profile. 167 180 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 SMART csp_8 7 72 IPR011129 GO:0003676
Gso16g1014 250 ProSiteProfiles Zinc finger CCHC-type profile. 232 245 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Gso16g1014 250 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Gso16g1014 250 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Gso16g1014 250 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Gso16g1014 250 ProSiteProfiles Zinc finger CCHC-type profile. 196 209 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 Pfam Zinc knuckle 166 181 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 Pfam Zinc knuckle 104 118 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 Pfam Zinc knuckle 231 245 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 Pfam Zinc knuckle 134 148 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 Pfam Zinc knuckle 195 209 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 PANTHER COLD SHOCK PROTEIN 2 121 249 - -
Gso16g1014 250 PANTHER COLD SHOCK PROTEIN 2 1 94 - -
Gso16g1014 250 PANTHER COLD SHOCK PROTEIN 2 89 131 - -
Gso16g1014 250 SUPERFAMILY Retrovirus zinc finger-like domains 96 150 IPR036875 GO:0003676|GO:0008270
Gso16g1014 250 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Gso16g1014 250 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Gso16g1014 250 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Gso16g1014 250 Gene3D - 189 221 - -
Gso16g1014 250 SMART c2hcfinal6 195 211 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 SMART c2hcfinal6 104 120 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 SMART c2hcfinal6 231 247 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Gso16g1014 250 Gene3D - 1 82 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1014 Gso-Chr16 27892406 27893546 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gso16g1014 CSD 1.4e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1014 K09250 - gmx:106796585 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0404 2 4296295 4297512 Gso16g1014 16 27892406 27893546 GST