Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0998 ATGAGTACCAAGTACATACACGTTTTTGATAGATTACAGAGTTTTTTCACTTGTTGGAAGAGAAGCACCACTCCAACTGGCAGAAGAATTTTCCACAGGGATGTGGAAAAGGAAGAATTTCAGTATGCCAGCACTCAATGTCTCTCATCTTACTACAGTGTCTTTGTGGTTCGTCTAGCAATCATGGCCATGCTAGCCATATTGATTGGTCTGCTCACTTTCCTAACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTTAATAGCTTGGCATATGACCTGCGTTATGAACTTCTTCAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACAACTGCTCAGGTTAAGCTGTCTCAATATGTGATCAGAAGCCACACCAACCTTGCCACTCAAGCAGACCAAGTTGAGATGTATGACGCGATGAGGGCTGTAACATGGGCTCTGTTTGTTAGTAAAAAGGCTCTCAATTCAATAACTGTCAAATACAAGAATGGATTTGTCCAAGCATTCCATAGGGACCTGAAGGATAACAATACCTTTTACATTTATTCTGATCTTGCTAATTACTCCATGGCTGCCAGTGGCTACAATGCTATCAATTCGCATTCTTCGCGTGAAGCTTGGAATGATAAAGACATTCATGGTCACAAGGCTGCAGTTTGGTATCGCGAACCACTTGATCCCGTCAGTGGTGAGAAGATTGGAAAAGTAATGCCAATTGCACCAGAAGACTCGATCAATATAGCCGGCCTCTCCCAAGTACCTGACGGTGTAGCTTCGTGGCACGTTGCTGTTAGCAAGTTTACAGATTCACCTTTGCTTTCTGCAGCATTGCCAGTTTGGGACTCTTCTAATAAAAGCATTGTGGCAGTTGTGGGTGTCACAACTGCCCTTTACAGTGTGGGGCAGCTCATGAAAGAGCTAGTTGAGAAACATAGTGGTCACATGTATTTGACCTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAATGCACCTCTACTGTCAAATACTACCAAACCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGAGAGGGAGCTCAGTGGCTTCAGAAAACCTATGGGAACAATTTCCCTCAAAGTCATGAGCTTCATGTAGAGAATGTCAGGCTAGGCCGCCAACAATATTACATCGACTCATTCTTCCTGAATTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCTAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATACTGACTAATGGAGTATCAAAGGAAATGAAACTCAGAGCAGAACTGATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTACAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTGAGGACACCAATGGCCGCAGTGATTGGGTTACTTGACATTCTTATATCTGATGACCGACTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCCCTGCTTCGTCTACTTAATAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGACGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAGCTAGTTCGGGGTGATTCTGCTAGAGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTGCAGTGATAATACAAATTTTCCTCTAGAGAAAAAGAAATCACGGTGTTCACAAAAGACCAGAGCAAAGCAACATGAAAACCATGCAAAGAGGACTTCCAATAGAGATAACAAAATCATACTTTGGTTTGAAGTTGATGATACAGGCTGTGGTATTGACCCAAGTAAATGGGAATCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGTACTGGTCTTGGTCTTTGCATAGTCAGAACCTTGGTTAATAAGATGGGCGGAGAAATCAAAGTTGTCAAAAAGGAGGGCCCAGGAACACTGATGAGATTATGCTTGCGTCTCAGTGCACCTGTAGATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAGGGCTTAGTGGTACTTCTTGCACTACACGGCAACATGGGTCGATCAGCTACATCTAAGTGGTTACAGAAAAATGGTGTGGTCACTATGGAGGCAGCAGAATGGAATGGATTAACACAAATTCTTAGGGTACTCTTTCATGCAAGAAGTTCATCTCATAATAATGGCTTTGATGCAAACTATTCAGTTCATGACAATTTAAAGTCAAGATTACTGAGCATACAGGAATTGAGGAACCCTGTTTTTGCCATTGCTGTTGACATTGGACTACTTGACTTGAGCACAGATATATGGAAGGAACAGATAAATTTCCTTCACAAATACTATGGGAGAGCAAAATTCGTGTGGATGCTAAACCATGACTCCTCCAATTCCATAAAGATGGAGCTTCGCAGGAAAGGACATACACTGACAGTGAACAAACCCCTTTACAAAACAAAAATGATTCATATTTTGGAAGCCATCATAAAGGAGAGAAATGAAGAGCTGCAAAAGAAAAATATGACTACTCCAAGAGCTACTGTGAAAGAGGGAGATTTGCATGAGAGTCTTGAGATTGATTATACTCAATGTGATGTTGCAAGCTCGGATGGTTCAGACATATCCGAAAAGGGTGGTTCTAATCCTGTTAGTGCCTGTGGAGATAAACAAAGAGAGAAGGTAGCGAGATCTGATCCATCATCACAACACCAGATAAATAACTTAGTTGGATTAACAATGGAAGATAATAATCATAGGAAAGAAGAGTTATGTCAGAGCAGCCTCAACTCTAATGATGTCAGTGCAAACGCCACACCAAAATCATCCTCCACTAAACAATCATCAACAGGAGCTCAAGATGAAGATTCTGAATATGGTGAAACACGTAGGGCCAGTAGCTCAAGTAGAGCAGTGATTGGAAAGAAATCTCTTGAAGGTTTGAGGATATTGCTTGCAGAAGATACACCGGTTATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCGTCGTTGTAGCTGTAGGTGATGGACAACAGGCAGTGGATGCTCTAAATGGCATGCCTGGTGTTGAAGATTGTATAAGGGAGTCTCTCCTGAAGGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCGGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCAGAAGTGGGAACTGACTTGCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAGTGCCTAGAGGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTCACGAGAAGGACATCCTAA 3666 0.4135 MSTKYIHVFDRLQSFFTCWKRSTTPTGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIRSHTNLATQADQVEMYDAMRAVTWALFVSKKALNSITVKYKNGFVQAFHRDLKDNNTFYIYSDLANYSMAASGYNAINSHSSREAWNDKDIHGHKAAVWYREPLDPVSGEKIGKVMPIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVEKHSGHMYLTSQEGYLLATSTNAPLLSNTTKPPKLKMAVDCENEVIREGAQWLQKTYGNNFPQSHELHVENVRLGRQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSCSDNTNFPLEKKKSRCSQKTRAKQHENHAKRTSNRDNKIILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLCLRLSAPVDATEQHCQVDFANKGLVVLLALHGNMGRSATSKWLQKNGVVTMEAAEWNGLTQILRVLFHARSSSHNNGFDANYSVHDNLKSRLLSIQELRNPVFAIAVDIGLLDLSTDIWKEQINFLHKYYGRAKFVWMLNHDSSNSIKMELRRKGHTLTVNKPLYKTKMIHILEAIIKERNEELQKKNMTTPRATVKEGDLHESLEIDYTQCDVASSDGSDISEKGGSNPVSACGDKQREKVARSDPSSQHQINNLVGLTMEDNNHRKEELCQSSLNSNDVSANATPKSSSTKQSSTGAQDEDSEYGETRRASSSSRAVIGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNGMPGVEDCIRESLLKERNTRSSQTEILGCPPYDLILMDCQMPKMDGYEATKAIRKSEVGTDLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTS* 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0998 1221 ProSiteProfiles Response regulatory domain profile. 1071 1217 IPR001789 GO:0000160
Gso16g0998 1221 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Gso16g0998 1221 SMART REC_2 1070 1213 IPR001789 GO:0000160
Gso16g0998 1221 Gene3D - 551 749 IPR036890 -
Gso16g0998 1221 SUPERFAMILY CheY-like 1068 1219 IPR011006 -
Gso16g0998 1221 MobiDBLite consensus disorder prediction 1018 1044 - -
Gso16g0998 1221 CDD REC_hyHK_CKI1_RcsC-like 1072 1213 - -
Gso16g0998 1221 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Gso16g0998 1221 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Gso16g0998 1221 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Gso16g0998 1221 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 745 IPR036890 -
Gso16g0998 1221 SMART HKATPase_4 596 748 IPR003594 -
Gso16g0998 1221 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Gso16g0998 1221 MobiDBLite consensus disorder prediction 1018 1060 - -
Gso16g0998 1221 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Gso16g0998 1221 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1218 - -
Gso16g0998 1221 MobiDBLite consensus disorder prediction 958 994 - -
Gso16g0998 1221 Gene3D - 471 550 - -
Gso16g0998 1221 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 746 IPR003594 -
Gso16g0998 1221 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 470 550 IPR036097 GO:0000155|GO:0007165
Gso16g0998 1221 Gene3D - 1050 1216 - -
Gso16g0998 1221 MobiDBLite consensus disorder prediction 644 664 - -
Gso16g0998 1221 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Gso16g0998 1221 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1218 - -
Gso16g0998 1221 Pfam Response regulator receiver domain 1141 1210 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0998 Gso-Chr16 27557383 27564479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0998 8 1221 Histidine Kinase Gene Family AT2G17820 64.075 0.0 1555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso16g0998 HATPase_c 6.6e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0998 - - gmx:100801970 2384.37