Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0978 ATGCTATCAAGGTTGATGGACTTTCTGACTGCCTGCTGGCGGCGAAGATCCTCCTCCGACGGCAAGGGTGGTTCCGAGGTTACGGGGCGGAAGGAAGGGCTGCTGTGGTACAAGGATGCGGGGCAGCACTTGTTTGGTGAATACTCAATGGCTGTTGTCCAGGCCAACAACCTGCTCGAGGACCAGAGCCAGATTGAGTCTGGTCCTCTCAGCCTGCTTGACACTGGCCCTTATGGGACCTTTGTTGGTGTATATGATGGACACGGTGGACCCGAGACGTCGCGCTACGTCTGTGATCATCTCTTCCAACATCTAAAACGATTTGCATCTGAGCAGAAGTCCATGTCTGAGGAGGTTATTCGGAAGGCATACCAAGCCACAGAAGAAGGTTTTTTGTCAGTGGTTACCAAACAGTGGCCCATGAATCCCCAAATTGCTGCTGTGGGATCTTGTTGTTTGGTTGGTGTGATTTGTGGTGGTATCCTCTACATTGCTAACCTTGGCGATTCCCGTGCTGTGCTTGGCCGGGTTGTCAGAGCAACCGGGGAGGTTTTGGCGATCCAGCTTTCGTCAGAGCATAATGTGGCCAGAGAATCTGTGAGACAAGAGATGCATTCTTTGCATCCGGATGACTCAAAAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGGAACCATTGTATGCTAAGTTCCGTGTGCGGGAAGGTTTTAAGAGGCCCATTTTGAGCTCTGACCCATCAATTTCCGTTCATGAAATTCAACAGCATGATCAATTTCTCATATTTGCTTCTGATGGTCTTTGGGAACACCTTAGCAATCAGGATGCTGTTGATATAGTTCAAAACAACCCACACAATGGAATTGCTCGGAGGCTCATCAAAGCTGCTTTGCAAGAAGCAGCAAAAAAGAGAGAGATGAGGTACTCTGATTTGAAGAAAATTGACCGTGGTGTCCGCCGGCATTTCCACGATGACATCACAGTTGTAGTTGTATTTCTTGACTCCAATCTTGTCAGCAGAGCCAGCTCGGTAAGAGGTCCTCCTTTATCGGTGAGAGGAGGTGGTATTCCCCTACCTTCTAGAACTTTGGCTCCCTGTGCTGCACCTATGGAAACTTAG 1185 0.4835 MLSRLMDFLTACWRRRSSSDGKGGSEVTGRKEGLLWYKDAGQHLFGEYSMAVVQANNLLEDQSQIESGPLSLLDTGPYGTFVGVYDGHGGPETSRYVCDHLFQHLKRFASEQKSMSEEVIRKAYQATEEGFLSVVTKQWPMNPQIAAVGSCCLVGVICGGILYIANLGDSRAVLGRVVRATGEVLAIQLSSEHNVARESVRQEMHSLHPDDSKIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNKEPLYAKFRVREGFKRPILSSDPSISVHEIQQHDQFLIFASDGLWEHLSNQDAVDIVQNNPHNGIARRLIKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLVSRASSVRGPPLSVRGGGIPLPSRTLAPCAAPMET* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0978 394 Gene3D - 34 365 IPR036457 -
Gso16g0978 394 ProSiteProfiles PPM-type phosphatase domain profile. 44 355 IPR001932 -
Gso16g0978 394 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 386 - -
Gso16g0978 394 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Gso16g0978 394 SMART PP2C_4 39 353 IPR001932 -
Gso16g0978 394 CDD PP2Cc 45 355 IPR001932 -
Gso16g0978 394 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Gso16g0978 394 PANTHER ALPHABET, ISOFORM E-RELATED 5 386 - -
Gso16g0978 394 Pfam Protein phosphatase 2C 80 324 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0978 Gso-Chr16 27134710 27141002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0978 1 383 PP2C-type Phosphatase Gene Family AT3G51370 78.125 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0978 K01102 - gmx:100782689 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0379 2 4058484 4063500 Gso16g0978 16 27134710 27141002 GST