Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0977 ATGAAAAGTAGGAGTGGATCTGCTCATAAGATGTTGCTGGAATTTATTGCTGGCATTTTAACAACAATGGTAGGGGCCTTACTCTATTGCCTCTTCAGGAGAAAGGTCATTCCATTTCTTAAGCAACGAAAGACTTTGAAAGGAAAGGAACATAAAAGCTTTGAATATGATAAAATATCATTAAGGTATTTTGATTTTAAGGAACTAGAGAGAGCAACCAAAAATTTTAGCCAAGATTGCTTGCTGGGTTCTGGTGCATTTGGAAATGTCTACAAAGGAACCTTTGACTTAGAAGGAACACTAGCCATTAAGAGAGCTCATTCTGAATCATTCTCAAGTGTGGAAGAATTCAGAAATGAAGTTAGGCTCCTTTCAGCTGTAAGGCACAGGAATCTTATTGGTCTGATTGGATATTGTGAAGAACCAGGACGACATGGAGCCAAAATACTAATCTATGAATATGTTCCAAATGGTTCACTGCTTGAGTACATCAAGGGAAACGAAACGAGCTTAACTTGGAAGCAAAGACTAAACATAGCAATAGGAGCAGCAAGAGGCATAGCTTATTTGCATGAAGGGGTGAAACCAAGCATAATTCACCGTGACATCAAACCAAGTAACATCCTATTAGGGGAAGGTTTTGAGGCTAAGGTTTCAGATTTTGGTCTAGTAAGATTAGGGCCAACTGGTGATCAATCACATGTCAGCAGCCAGATTAAAGGGACACCAGGGTACCTTGACCCTGCCTATTGTTTAAGCTTTCATTTGACCAAATTCAGCGACGTTTATAGCTTTGGTATCATACTTTTGCAACTTGTTTCAGCTAGACCTGTGGTGGATTCCGCTGTAAACCAAAGTAATCAACATATTATTGAATGGGCAAGGCCAAGCTTAGAGAAGGGTAGTGTTGAAGAAATCATAGATGCAAATCTACTATGTCAAAGTGAGCCGTGCAACATGGAAGTTATGCTAAAGATGGGACAACTTGGTTTAAGATGTGTGGTTGAAGAACCAAAACATCGCCCAACAATGACACAGGTGTGTCAAGAACTAGAGCAAGCCCTCCATTCAGCTGATGATAGCTTCAATAACAAGCAGTCTCCAAAGCGGTTCCATACACCAATTGGCTCATCCCAGCAATCAACAAAGTCAGAGACTCAGCGATCAGTTGAATCATACGATTGTTCACAAAGCTTTGTTAGTATTGACAGTGTTGGATTACAGAAATTTCATGTTGATATGGATAGTTTCTCCTTTAAGAGCACAGACTTAAGGTGCCTAGAAAATAATAGTATCAGCATTGACATGGATAGAATATAA 1320 0.3955 MKSRSGSAHKMLLEFIAGILTTMVGALLYCLFRRKVIPFLKQRKTLKGKEHKSFEYDKISLRYFDFKELERATKNFSQDCLLGSGAFGNVYKGTFDLEGTLAIKRAHSESFSSVEEFRNEVRLLSAVRHRNLIGLIGYCEEPGRHGAKILIYEYVPNGSLLEYIKGNETSLTWKQRLNIAIGAARGIAYLHEGVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVRLGPTGDQSHVSSQIKGTPGYLDPAYCLSFHLTKFSDVYSFGIILLQLVSARPVVDSAVNQSNQHIIEWARPSLEKGSVEEIIDANLLCQSEPCNMEVMLKMGQLGLRCVVEEPKHRPTMTQVCQELEQALHSADDSFNNKQSPKRFHTPIGSSQQSTKSETQRSVESYDCSQSFVSIDSVGLQKFHVDMDSFSFKSTDLRCLENNSISIDMDRI* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0977 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Gso16g0977 439 Gene3D Transferase(Phosphotransferase) domain 1 155 377 - -
Gso16g0977 439 Gene3D Phosphorylase Kinase; domain 1 38 154 - -
Gso16g0977 439 Pfam Protein tyrosine and serine/threonine kinase 81 351 IPR001245 GO:0004672|GO:0006468
Gso16g0977 439 ProSiteProfiles Protein kinase domain profile. 76 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0977 439 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Gso16g0977 439 CDD STKc_IRAK 82 353 - -
Gso16g0977 439 SUPERFAMILY Protein kinase-like (PK-like) 55 352 IPR011009 -
Gso16g0977 439 SMART serkin_6 76 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0977 439 MobiDBLite consensus disorder prediction 362 388 - -
Gso16g0977 439 PANTHER OS01G0750732 PROTEIN 15 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0977 Gso-Chr16 27130229 27133413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0977 62 389 Receptor kinase-like Gene Family AT1G30570 41.983 2.65e-80 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gso16g0977 PK_Tyr_Ser-Thr 9.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0977 - - gmx:106794267 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0378 2 4053376 4057261 Gso16g0977 16 27130229 27133413 GST