Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0976 ATGGAGTTTGTGCCAAATCAATGCCCTTTGATGGGTTCCTTTGGGAATTTCGTTGAGAGGGTCAAAAGGGTTGGTACCCTCTTCGTCTCTGCCATCATTGGGAACATATTCTCTGCGATCTTGACCTTCTGCTTTGCGTTAGTTGGCACTTTGTTGGGTGCTATGACTGGTGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTCGAGGGGCTGCTATAGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTTTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGATTGATGTTCTTGGTAGCCTATTGAGTGGAAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAATAAGCTTTGATGAGGTACAAAACCTCTTTGACATTGGTGGCGCCAAAGGTTTATCGAGAGATTCAGTTGAAAAGATCCCAAAGATCACAATTACTAGTGACAACAATGTTGATGCTTCTGGGGAGAAAGATTCATGTTCAGTTTGCCTTCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCCCATTGTCATCACATATTTCACCTACCTTGCATTGATATGTGGCTGATGAAACATGGTTCCTGCCCATTATGCAGAAGGGATCTGGGTAATTTTGTAAATGCAAAGTACAAACCGTAA 726 0.4366 MEFVPNQCPLMGSFGNFVERVKRVGTLFVSAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLVLWKSDESGIGCVLYLIDVLGSLLSGRLVRERIGPAMLSAVQSQMGAVEISFDEVQNLFDIGGAKGLSRDSVEKIPKITITSDNNVDASGEKDSCSVCLQDFQLGETGRSLPHCHHIFHLPCIDMWLMKHGSCPLCRRDLGNFVNAKYKP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0976 241 CDD RING-H2_PA-TM-RING 186 228 - -
Gso16g0976 241 Pfam Ring finger domain 184 228 IPR001841 -
Gso16g0976 241 SUPERFAMILY RING/U-box 180 233 - -
Gso16g0976 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 233 IPR013083 -
Gso16g0976 241 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Gso16g0976 241 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 231 IPR044523 -
Gso16g0976 241 SMART ring_2 186 227 IPR001841 -
Gso16g0976 241 Pfam YMGG-like Gly-zipper 45 81 IPR027367 -
Gso16g0976 241 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 13 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0976 Gso-Chr16 27082545 27085696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0976 18 231 C3H Transcription Factor Family AT5G66070 72.430 7.21e-110 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0976 - - gmx:100816939 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0376 2 4037092 4039654 Gso16g0976 16 27082545 27085696 GST
Gso11g0683 11 6085207 6088189 Gso16g0976 16 27082545 27085696 PCT
Gso16g0976 16 27082545 27085696 Gso11g0683 11 6085207 6088189 PCT