Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0974 ATGGCTGATTCTCCCCTTGCAAGGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAGGTCAAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCCCGTTCTAGAAGTCATGGCAGGTCAAGATCACCAATTCATGGAAGGTCAAGGTCACCCATTCATGGAAGGTCCGAGCCTTCAAATCCTGGTGACACACTTTATGTAACCGGTCTATCTTCAAGGGTCACTGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAGGATGCGGAGCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGTCACGAAGAAAACGCGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATGGCTTTCGTGGTGAGCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATTATTCACGCCGTAGGTCTCCAAGGCGTTCACCGTACAGAGGTGGCCAAGATTATTCACCCCGGCGCTCACCCTATGGGGGAAGGTCTAGGAGGGATAGCTCTAGGTCGCTTCCTTATTCTCCACATGGTAGCCCAGACAGGAAGTATGCTCGTGGATCTAGTTTGCGCCCTATATACAATGTATAA 744 0.4946 MADSPLARNSRSPSPWKAQSRSRSRSRSRSRSRPRQRPRSRSRSHGRSRSPIHGRSRSPIHGRSEPSNPGDTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKYLNQSVLEGRYITIERSRRKRARTPTPGHYLGLKNTREYGFRGERGRYRDGPDRDNYSRRRSPRRSPYRGGQDYSPRRSPYGGRSRRDSSRSLPYSPHGSPDRKYARGSSLRPIYNV* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0974 247 MobiDBLite consensus disorder prediction 1 72 - -
Gso16g0974 247 PANTHER RNA RECOGNITION MOTIF 2 246 - -
Gso16g0974 247 SMART rrm1_1 72 145 IPR000504 GO:0003723
Gso16g0974 247 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 246 - -
Gso16g0974 247 MobiDBLite consensus disorder prediction 168 192 - -
Gso16g0974 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Gso16g0974 247 SUPERFAMILY RNA-binding domain, RBD 64 179 IPR035979 GO:0003676
Gso16g0974 247 Gene3D - 8 155 IPR012677 -
Gso16g0974 247 MobiDBLite consensus disorder prediction 1 21 - -
Gso16g0974 247 MobiDBLite consensus disorder prediction 22 56 - -
Gso16g0974 247 MobiDBLite consensus disorder prediction 148 247 - -
Gso16g0974 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Gso16g0974 247 CDD RRM_RBMX_like 70 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0974 Gso-Chr16 27013122 27016365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0974 70 153 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 1.77e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0974 K12897 - gmx:100499944 373.244